Functional clusters

Information

  • Type InterPro
  • Description Cytochrome b-c1 complex subunit Rieske, transmembrane domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 5 CH_aar_271 2 2 0.0000912326
Arabidopsis lyrata scaffold_6 5 CH_aly_432 2 2 0.0000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 5 CH_arhy_485 3 4 0.000000107553
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 5 CH_arhy_486 3 4 0.000000107553
Arabidopsis thaliana Chr5 5 CH_ath_365 2 2 0.0000286492
Brassica carinata Contig655 5 CH_bca_1885 2 2 0.00059854
Brassica carinata Contig461 5 CH_bca_1886 2 2 0.00059854
Brassica carinata ChrC04 5 CH_bca_1887 2 2 0.00059854
Brassica carinata ChrB01 5 CH_bca_1888 2 2 0.00059854
Brassica oleracea C2 5 CH_bol_659 2 2 0.000196117
Brassica rapa A02 5 CH_bra_516 2 2 0.000429314
Brassica rapa A03 5 CH_bra_517 2 2 0.000429314
Cardamine hirsuta Chr6 5 CH_chi_480 2 2 0.0000691204
Carya illinoinensis Chr04 5 CH_cil_667 2 2 0.000185948
Capsella rubella scaffold_6 5 CH_cru_449 2 2 0.0000731154
Cucumis sativus L. chr5 5 CH_csa_336 2 2 0.0000834759
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_528 2 2 0.0000448722
Eutrema salsugineum scaffold_2 5 CH_esa_334 2 2 0.0000761499
Glycine max Gm02 5 CH_gma_632 2 2 0.000113867
Petunia axillaris Peaxi162Scf00842 5 CH_pax_409 2 2 0.0000703556
Sechium edule LG03 5 CH_sed_392 2 2 0.000214026
Aethionema arabicum LG-3 6 CH_aar_271 2 2 0.0000912326
Arabidopsis lyrata scaffold_6 6 CH_aly_432 2 2 0.0000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 6 CH_arhy_485 3 4 0.000000107553
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 6 CH_arhy_486 3 4 0.000000107553
Arabidopsis thaliana Chr5 6 CH_ath_365 2 2 0.0000286492
Brassica carinata Contig655 6 CH_bca_1885 2 2 0.00059854
Brassica carinata Contig461 6 CH_bca_1886 2 2 0.00059854
Brassica carinata ChrC04 6 CH_bca_1887 2 2 0.00059854
Brassica carinata ChrB01 6 CH_bca_1888 2 2 0.00059854
Brassica oleracea C2 6 CH_bol_659 2 2 0.000196117
Brassica rapa A02 6 CH_bra_516 2 2 0.000429314
Brassica rapa A03 6 CH_bra_517 2 2 0.000429314
Cardamine hirsuta Chr6 6 CH_chi_480 2 2 0.0000691204
Carya illinoinensis Chr04 6 CH_cil_667 2 2 0.000185948
Cucumis melo chr09 6 CH_cme_301 2 2 0.0000667111
Capsella rubella scaffold_6 6 CH_cru_449 2 2 0.0000731154
Cucumis sativus L. chr5 6 CH_csa_336 2 2 0.0000834759
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_528 2 2 0.0000448722
Eutrema salsugineum scaffold_2 6 CH_esa_334 2 2 0.0000761499
Glycine max Gm02 6 CH_gma_632 2 2 0.000113867
Petunia axillaris Peaxi162Scf00842 6 CH_pax_409 2 2 0.0000703556
Sechium edule LG03 6 CH_sed_392 2 2 0.000214026

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001