Functional clusters
Information
- Type InterPro
- Description Putative S-adenosyl-L-methionine-dependent methyltransferase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group22 | 5 | CH_ach_307 | 3 | 3 | 0.000143895 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 5 | CH_bvu_517 | 3 | 6 | 0.00079717 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_1243 | 3 | 5 | 0.000287879 |
| Chara braunii | BFEA01000027 | 5 | CH_cbr_140 | 3 | 5 | 0.0000170636 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1870 | 5 | CH_cqu_657 | 3 | 3 | 0.0000620461 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2646 | 5 | CH_cqu_905 | 5 | 62 | 0.000443381 |
| Davidia involucrata | GWHABJS00000020 | 5 | CH_din_495 | 3 | 3 | 0.0000878936 |
| Lupinus albus | Lalb_Chr01 | 5 | CH_lal_561 | 3 | 3 | 0.000216477 |
| Lupinus albus | Lalb_Chr09 | 5 | CH_lal_562 | 3 | 3 | 0.000216477 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_492 | 4 | 5 | 0.000000479589 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_1167 | 3 | 6 | 0.000504291 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_398 | 4 | 5 | 0.000000101156 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_514 | 3 | 4 | 0.0000611175 |
| Populus trichocarpa | Chr02 | 5 | CH_ptr_559 | 3 | 3 | 0.0000760735 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_492 | 3 | 3 | 0.000140057 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_830 | 4 | 14 | 0.00000681018 |
| Sechium edule | LG02 | 5 | CH_sed_486 | 3 | 5 | 0.000592101 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_1522 | 3 | 3 | 0.0000254172 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1523 | 3 | 3 | 0.0000254172 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_1524 | 3 | 3 | 0.0000254172 |
| Selaginella moellendorffii | scaffold_7 | 5 | CH_smo_242 | 3 | 5 | 0.000126569 |
| Tarenaya hassleriana | NW_010962392.1 | 5 | CH_tha_212 | 3 | 3 | 0.000126575 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_399 | 5 | CH_tpr_455 | 3 | 3 | 0.0000613716 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_162 | 5 | CH_tpr_456 | 3 | 3 | 0.0000613716 |
| Zea mays | 5 | 5 | CH_zma_458 | 4 | 16 | 0.000375512 |
| Actinidia chinensis | Lachesis_group22 | 6 | CH_ach_307 | 3 | 3 | 0.000143895 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 6 | CH_bvu_517 | 3 | 6 | 0.00079717 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_1243 | 3 | 5 | 0.000287879 |
| Chara braunii | BFEA01000027 | 6 | CH_cbr_140 | 3 | 5 | 0.0000170636 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1870 | 6 | CH_cqu_657 | 3 | 3 | 0.0000620461 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2646 | 6 | CH_cqu_905 | 5 | 62 | 0.000443381 |
| Davidia involucrata | GWHABJS00000020 | 6 | CH_din_495 | 3 | 3 | 0.0000878936 |
| Lupinus albus | Lalb_Chr01 | 6 | CH_lal_561 | 3 | 3 | 0.000216477 |
| Lupinus albus | Lalb_Chr09 | 6 | CH_lal_562 | 3 | 3 | 0.000216477 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_492 | 4 | 5 | 0.000000479589 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_1167 | 3 | 6 | 0.000504291 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_398 | 4 | 5 | 0.000000101156 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_514 | 3 | 4 | 0.0000611175 |
| Populus trichocarpa | Chr02 | 6 | CH_ptr_559 | 3 | 3 | 0.0000760735 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_492 | 3 | 3 | 0.000140057 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_830 | 4 | 14 | 0.00000681018 |
| Sechium edule | LG02 | 6 | CH_sed_486 | 3 | 5 | 0.000592101 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_1522 | 3 | 3 | 0.0000254172 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1523 | 3 | 3 | 0.0000254172 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_1524 | 3 | 3 | 0.0000254172 |
| Selaginella moellendorffii | scaffold_7 | 6 | CH_smo_242 | 3 | 5 | 0.000126569 |
| Tarenaya hassleriana | NW_010962392.1 | 6 | CH_tha_212 | 3 | 3 | 0.000126575 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_399 | 6 | CH_tpr_455 | 3 | 3 | 0.0000613716 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_162 | 6 | CH_tpr_456 | 3 | 3 | 0.0000613716 |
| Zea mays | 5 | 6 | CH_zma_458 | 4 | 16 | 0.000375512 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |