Functional clusters
Information
- Type InterPro
- Description Strictosidine synthase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 5 | CH_acertr_708 | 2 | 3 | 0.000211484 |
| Camellia sinensis var. sinensis | Chr15 | 5 | CH_camsi_267 | 4 | 8 | 0.000000000101228 |
| Corylus avellana | 1 | 5 | CH_cav_244 | 3 | 6 | 0.000000176333 |
| Coffea canephora | chr4 | 5 | CH_ccan_100 | 4 | 17 | 0.00000000075268 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_205 | 3 | 3 | 0.000000122031 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_742 | 2 | 2 | 0.000956663 |
| Davidia involucrata | GWHABJS00000006 | 5 | CH_din_43 | 6 | 7 | 3.45032e-19 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_801 | 2 | 2 | 0.0000386429 |
| Lonicera japonica | GWHAAZE00000009 | 5 | CH_lonja_111 | 7 | 7 | 8.91052e-19 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_58 | 10 | 11 | 8.84419e-28 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_314 | 3 | 5 | 0.0000000396294 |
| Manihot esculenta | Chromosome01 | 5 | CH_mes_494 | 2 | 2 | 0.0000610631 |
| Salix brachista | GWHAAZH00000015 | 5 | CH_sbr_18 | 12 | 38 | 1.78977e-29 |
| Tripterygium wilfordii | NC_052251.1 | 5 | CH_twi_12 | 8 | 10 | 2.13661e-25 |
| Vitis vinifera | chr17 | 5 | CH_vvi_220 | 3 | 3 | 0.0000000086787 |
| Acer truncatum | chr9 | 6 | CH_acertr_708 | 2 | 3 | 0.000211484 |
| Camellia sinensis var. sinensis | Chr15 | 6 | CH_camsi_267 | 4 | 8 | 0.000000000101228 |
| Corylus avellana | 1 | 6 | CH_cav_244 | 3 | 6 | 0.000000176333 |
| Coffea canephora | chr4 | 6 | CH_ccan_100 | 4 | 17 | 0.00000000075268 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_205 | 3 | 3 | 0.000000122031 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_742 | 2 | 2 | 0.000956663 |
| Davidia involucrata | GWHABJS00000006 | 6 | CH_din_43 | 6 | 7 | 3.45032e-19 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_801 | 2 | 2 | 0.0000386429 |
| Lonicera japonica | GWHAAZE00000009 | 6 | CH_lonja_111 | 7 | 7 | 8.91052e-19 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_58 | 10 | 11 | 8.84419e-28 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_314 | 3 | 5 | 0.0000000396294 |
| Manihot esculenta | Chromosome01 | 6 | CH_mes_494 | 2 | 2 | 0.0000610631 |
| Salix brachista | GWHAAZH00000015 | 6 | CH_sbr_18 | 12 | 38 | 1.78977e-29 |
| Tripterygium wilfordii | NC_052251.1 | 6 | CH_twi_12 | 8 | 10 | 2.13661e-25 |
| Vitis vinifera | chr17 | 6 | CH_vvi_220 | 3 | 3 | 0.0000000086787 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |