Functional clusters
Information
- Type InterPro
- Description Paired amphipathic helix
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 5 | CH_aar_58 | 5 | 5 | 0.000000000000130972 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_381 | 3 | 3 | 0.0000169912 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_567 | 3 | 6 | 0.000339211 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_639 | 3 | 7 | 0.000593262 |
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_23 | 6 | 12 | 4.82808e-16 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_295 | 4 | 4 | 0.00000000003985 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_535 | 3 | 4 | 0.000000295785 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_214 | 4 | 9 | 0.000000112301 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_56 | 6 | 10 | 0.0000000000000161367 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_77 | 6 | 17 | 0.000000000000949341 |
| Brassica carinata | ChrB05 | 5 | CH_bca_63 | 6 | 6 | 1.11244e-16 |
| Brassica rapa | A07 | 5 | CH_bra_288 | 3 | 4 | 0.000010713 |
| Capsicum annuum | PGAv.1.6.scaffold206 | 5 | CH_can_76 | 6 | 6 | 1.81868e-17 |
| Cicer arietinum L. | Ca_LG2_v3 | 5 | CH_car_294 | 2 | 2 | 0.00023349 |
| Corylus avellana | 5 | 5 | CH_cav_468 | 3 | 14 | 0.0000641046 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_30 | 8 | 9 | 5.21734e-23 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_343 | 3 | 3 | 0.00000204968 |
| Citrullus lanatus | CG_Chr01 | 5 | CH_cla_336 | 2 | 2 | 0.000532269 |
| Carica papaya | supercontig_83 | 5 | CH_cpa_176 | 3 | 5 | 0.000000542189 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_39 | 7 | 7 | 1.39974e-18 |
| Eutrema salsugineum | scaffold_5 | 5 | CH_esa_211 | 3 | 3 | 0.00000143526 |
| Gossypium hirsutum | D09 | 5 | CH_ghi_364 | 4 | 7 | 0.00000000272759 |
| Glycine max | Gm08 | 5 | CH_gma_151 | 4 | 4 | 0.0000000000541366 |
| Gossypium raimondii | Chr06 | 5 | CH_gra_95 | 5 | 5 | 0.00000000000000780741 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_574 | 3 | 4 | 0.00000197086 |
| Lupinus albus | Lalb_Chr02 | 5 | CH_lal_291 | 3 | 3 | 0.00000280957 |
| Lupinus albus | Lalb_Chr05 | 5 | CH_lal_292 | 3 | 3 | 0.00000280957 |
| Lupinus albus | Lalb_Chr07 | 5 | CH_lal_65 | 5 | 5 | 0.000000000000352156 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_1211 | 2 | 2 | 0.000728491 |
| Malus domestica | Chr09 | 5 | CH_mdo_1399 | 2 | 2 | 0.000796344 |
| Medicago truncatula | chr3 | 5 | CH_mtr_209 | 7 | 17 | 0.00000000000009247 |
| Petunia axillaris | Peaxi162Scf00129 | 5 | CH_pax_695 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_413 | 2 | 2 | 0.0000750356 |
| Prunus persica | Pp03 | 5 | CH_ppe_685 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr2LG1 | 5 | CH_psa_50 | 8 | 52 | 7.43086e-16 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_255 | 3 | 3 | 0.000000161953 |
| Quercus lobata | CM012294 | 5 | CH_qlo_43 | 11 | 13 | 5.58999e-34 |
| Simmondsia chinensis | GWHAASQ00000011 | 5 | CH_sci_450 | 2 | 2 | 0.000510856 |
| Solanum lycopersicum | SL4.0ch10 | 5 | CH_sly_216 | 4 | 4 | 0.00000000293924 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_256 | 4 | 5 | 0.0000000146903 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_59 | 7 | 7 | 2.49701e-19 |
| Schrenkiella parvula | ch5-6 | 5 | CH_spa_13 | 6 | 6 | 6.29268e-17 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_411 | 3 | 4 | 0.00000432 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_370 | 3 | 3 | 0.000000330894 |
| Trochodendron aralioides | group8 | 5 | CH_tar_873 | 2 | 2 | 0.000600366 |
| Aethionema arabicum | LG-4 | 6 | CH_aar_58 | 5 | 5 | 0.000000000000130972 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_381 | 3 | 3 | 0.0000169912 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_567 | 3 | 6 | 0.000339211 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_639 | 3 | 7 | 0.000593262 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_23 | 6 | 12 | 4.82808e-16 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_295 | 4 | 4 | 0.00000000003985 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_535 | 3 | 4 | 0.000000295785 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_214 | 4 | 9 | 0.000000112301 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_56 | 6 | 10 | 0.0000000000000161367 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_77 | 6 | 17 | 0.000000000000949341 |
| Brassica carinata | ChrB05 | 6 | CH_bca_63 | 6 | 6 | 1.11244e-16 |
| Brassica rapa | A07 | 6 | CH_bra_288 | 3 | 4 | 0.000010713 |
| Capsicum annuum | PGAv.1.6.scaffold206 | 6 | CH_can_76 | 6 | 6 | 1.81868e-17 |
| Cicer arietinum L. | Ca_LG2_v3 | 6 | CH_car_294 | 2 | 2 | 0.00023349 |
| Corylus avellana | 5 | 6 | CH_cav_468 | 3 | 14 | 0.0000641046 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_30 | 8 | 9 | 5.21734e-23 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_343 | 3 | 3 | 0.00000204968 |
| Citrullus lanatus | CG_Chr01 | 6 | CH_cla_336 | 2 | 2 | 0.000532269 |
| Carica papaya | supercontig_83 | 6 | CH_cpa_176 | 3 | 5 | 0.000000542189 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_39 | 7 | 7 | 1.39974e-18 |
| Eutrema salsugineum | scaffold_5 | 6 | CH_esa_211 | 3 | 3 | 0.00000143526 |
| Fragaria x ananassa | Fvb6-4 | 6 | CH_fan_447 | 3 | 3 | 0.00000103949 |
| Gossypium hirsutum | D09 | 6 | CH_ghi_364 | 4 | 7 | 0.00000000272759 |
| Glycine max | Gm08 | 6 | CH_gma_151 | 4 | 4 | 0.0000000000541366 |
| Gossypium raimondii | Chr06 | 6 | CH_gra_95 | 5 | 5 | 0.00000000000000780741 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_574 | 3 | 4 | 0.00000197086 |
| Lupinus albus | Lalb_Chr02 | 6 | CH_lal_291 | 3 | 3 | 0.00000280957 |
| Lupinus albus | Lalb_Chr05 | 6 | CH_lal_292 | 3 | 3 | 0.00000280957 |
| Lupinus albus | Lalb_Chr07 | 6 | CH_lal_65 | 5 | 5 | 0.000000000000352156 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_1211 | 2 | 2 | 0.000728491 |
| Malus domestica | Chr09 | 6 | CH_mdo_1399 | 2 | 2 | 0.000796344 |
| Medicago truncatula | chr3 | 6 | CH_mtr_209 | 7 | 17 | 0.00000000000009247 |
| Petunia axillaris | Peaxi162Scf00129 | 6 | CH_pax_695 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_413 | 2 | 2 | 0.0000750356 |
| Prunus persica | Pp03 | 6 | CH_ppe_685 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr2LG1 | 6 | CH_psa_50 | 8 | 52 | 7.43086e-16 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_255 | 3 | 3 | 0.000000161953 |
| Quercus lobata | CM012294 | 6 | CH_qlo_43 | 11 | 13 | 5.58999e-34 |
| Simmondsia chinensis | GWHAASQ00000011 | 6 | CH_sci_450 | 2 | 2 | 0.000510856 |
| Solanum lycopersicum | SL4.0ch10 | 6 | CH_sly_216 | 4 | 4 | 0.00000000293924 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_256 | 4 | 5 | 0.0000000146903 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_59 | 7 | 7 | 2.49701e-19 |
| Schrenkiella parvula | ch5-6 | 6 | CH_spa_13 | 6 | 6 | 6.29268e-17 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_411 | 3 | 4 | 0.00000432 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_370 | 3 | 3 | 0.000000330894 |
| Trochodendron aralioides | group8 | 6 | CH_tar_873 | 2 | 2 | 0.000600366 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |