Functional clusters

Information

  • Type InterPro
  • Description Phenazine biosynthesis PhzF protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 5 CH_acertr_189 3 3 0.000000007455
Actinidia chinensis Lachesis_group19 5 CH_ach_263 2 2 0.0000543213
Arabidopsis lyrata scaffold_6 5 CH_aly_196 3 3 0.0000000261404
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_1298 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 5 CH_arhy_1299 2 2 0.000838273
Arabidopsis thaliana Chr4 5 CH_ath_421 2 2 0.0000859476
Brassica carinata ChrC05 5 CH_bca_693 3 4 0.000000603133
Brassica rapa A04 5 CH_bra_151 3 3 0.0000000967649
Camellia sinensis var. sinensis Chr11 5 CH_camsi_116 5 7 0.00000000000000417822
Citrus clementina scaffold_3 5 CH_ccl_707 2 2 0.000492187
Carpinus fangiana Cfa02 5 CH_cfa_484 2 2 0.000227204
Cardamine hirsuta Chr8 5 CH_chi_64 5 5 0.00000000000000102737
Carica papaya supercontig_52 5 CH_cpa_301 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3080 5 CH_cqu_921 2 2 0.000473821
Cucumis sativus L. chr7 5 CH_csa_203 4 47 0.000000310734
Durio zibethinus NW_019167938.1 5 CH_dzi_435 2 2 0.000139047
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_526 2 2 0.0000448722
Eucalyptus grandis Chr03 5 CH_egr_14 15 16 7.08562e-51
Erythranthe guttata scaffold_4 5 CH_egut_270 3 5 0.0000000795267
Eutrema salsugineum scaffold_3 5 CH_esa_155 3 3 0.0000000347941
Fragaria vesca Fvb2 5 CH_fve_235 3 3 0.00000000520576
Gossypium hirsutum A08 5 CH_ghi_1033 2 2 0.000267016
Gossypium hirsutum D08 5 CH_ghi_434 3 4 0.0000000427775
Glycine max Gm02 5 CH_gma_908 2 3 0.000683172
Gossypium raimondii Chr04 5 CH_gra_216 3 4 0.0000000172446
Helianthus annuus HanXRQChr01 5 CH_han_355 3 3 0.0000000089598
Hydrangea macrophylla Hma1.2p1_0628F.1 5 CH_hma_323 2 2 0.000111086
Lupinus albus Lalb_Chr06 5 CH_lal_392 2 2 0.0000524824
Lotus japonicus chr5 5 CH_lja_141 3 4 0.0000000306801
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_313 3 5 0.0000000396294
Magnolia biondii Chr17 5 CH_mbi_1246 2 4 0.000874119
Malus domestica Chr03 5 CH_mdo_1398 2 2 0.000796344
Malus domestica Chr11 5 CH_mdo_91 5 6 0.00000000000000195428
Manihot esculenta Chromosome05 5 CH_mes_276 3 3 0.0000000559323
Medicago truncatula chr1 5 CH_mtr_204 5 7 0.0000000000000565479
Medicago truncatula chr1 5 CH_mtr_664 3 4 0.000000850717
Nicotiana tabacum Nitab4.5_0001028 5 CH_nta_63 3 3 0.0000000180611
Petunia axillaris Peaxi162Scf00570 5 CH_pax_408 2 2 0.0000703556
Punica granatum NC_045132.1 5 CH_pgr_412 2 2 0.0000750356
Prunus persica Pp08 5 CH_ppe_588 2 2 0.0000745962
Populus trichocarpa Chr10 5 CH_ptr_595 2 3 0.000173395
Phaseolus vulgaris Chr07 5 CH_pvu_223 3 3 0.0000000323906
Quercus lobata 12 5 CH_qlo_315 5 7 0.0000000000000235006
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_422 3 3 0.00000000238391
Sequoiadendron giganteum chr4 5 CH_sgi_495 4 5 0.00000000000173422
Schrenkiella parvula ch6-1 5 CH_spa_31 4 4 0.0000000000014644
Solanum tuberosum ST4.03ch09 5 CH_stu_317 3 5 0.0000000393901
Trochodendron aralioides group2 5 CH_tar_161 3 3 0.00000000540676
Theobroma cacao Chromosome_1 5 CH_tca_523 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_scaf_74 5 CH_tpr_154 3 3 0.00000000859546
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_181 3 3 0.0000000518115
Vigna mungo CM024071.1 5 CH_vmu_62 4 6 0.0000000000121397
Vitis vinifera chr7 5 CH_vvi_219 3 3 0.0000000086787
Acer truncatum chr5 6 CH_acertr_189 3 3 0.000000007455
Actinidia chinensis Lachesis_group19 6 CH_ach_263 2 2 0.0000543213
Arabidopsis lyrata scaffold_6 6 CH_aly_196 3 3 0.0000000261404
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_1298 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 6 CH_arhy_1299 2 2 0.000838273
Arabidopsis thaliana Chr4 6 CH_ath_421 2 2 0.0000859476
Brassica carinata ChrC05 6 CH_bca_693 3 4 0.000000603133
Brassica rapa A04 6 CH_bra_151 3 3 0.0000000967649
Camellia sinensis var. sinensis Chr11 6 CH_camsi_116 5 7 0.00000000000000417822
Citrus clementina scaffold_3 6 CH_ccl_707 2 2 0.000492187
Carpinus fangiana Cfa02 6 CH_cfa_484 2 2 0.000227204
Cardamine hirsuta Chr8 6 CH_chi_64 5 5 0.00000000000000102737
Cucumis melo chr01 6 CH_cme_70 4 5 0.00000000000445364
Carica papaya supercontig_52 6 CH_cpa_301 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3080 6 CH_cqu_921 2 2 0.000473821
Cucumis sativus L. chr7 6 CH_csa_203 4 47 0.000000310734
Durio zibethinus NW_019167938.1 6 CH_dzi_435 2 2 0.000139047
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_526 2 2 0.0000448722
Eucalyptus grandis Chr03 6 CH_egr_14 15 16 7.08562e-51
Erythranthe guttata scaffold_4 6 CH_egut_270 3 5 0.0000000795267
Eutrema salsugineum scaffold_3 6 CH_esa_155 3 3 0.0000000347941
Fragaria x ananassa Fvb2-4 6 CH_fan_891 2 2 0.000185036
Fragaria x ananassa Fvb2-2 6 CH_fan_892 2 2 0.000185036
Fragaria vesca Fvb2 6 CH_fve_235 3 3 0.00000000520576
Gossypium hirsutum A08 6 CH_ghi_1033 2 2 0.000267016
Gossypium hirsutum D08 6 CH_ghi_434 3 4 0.0000000427775
Glycine max Gm02 6 CH_gma_908 2 3 0.000683172
Gossypium raimondii Chr04 6 CH_gra_216 3 4 0.0000000172446
Helianthus annuus HanXRQChr01 6 CH_han_355 3 3 0.0000000089598
Hydrangea macrophylla Hma1.2p1_0628F.1 6 CH_hma_323 2 2 0.000111086
Lupinus albus Lalb_Chr06 6 CH_lal_392 2 2 0.0000524824
Lotus japonicus chr5 6 CH_lja_141 3 4 0.0000000306801
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_313 3 5 0.0000000396294
Magnolia biondii Chr17 6 CH_mbi_1246 2 4 0.000874119
Malus domestica Chr03 6 CH_mdo_1398 2 2 0.000796344
Malus domestica Chr11 6 CH_mdo_91 5 6 0.00000000000000195428
Manihot esculenta Chromosome05 6 CH_mes_276 3 3 0.0000000559323
Medicago truncatula chr1 6 CH_mtr_204 5 7 0.0000000000000565479
Medicago truncatula chr1 6 CH_mtr_664 3 4 0.000000850717
Nicotiana tabacum Nitab4.5_0001028 6 CH_nta_63 3 3 0.0000000180611
Petunia axillaris Peaxi162Scf00570 6 CH_pax_408 2 2 0.0000703556
Punica granatum NC_045132.1 6 CH_pgr_412 2 2 0.0000750356
Prunus persica Pp08 6 CH_ppe_588 2 2 0.0000745962
Populus trichocarpa Chr10 6 CH_ptr_595 2 3 0.000173395
Phaseolus vulgaris Chr07 6 CH_pvu_223 3 3 0.0000000323906
Quercus lobata 12 6 CH_qlo_315 5 7 0.0000000000000235006
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_422 3 3 0.00000000238391
Sequoiadendron giganteum chr4 6 CH_sgi_495 4 5 0.00000000000173422
Schrenkiella parvula ch6-1 6 CH_spa_31 4 4 0.0000000000014644
Solanum tuberosum ST4.03ch09 6 CH_stu_317 3 5 0.0000000393901
Trochodendron aralioides group2 6 CH_tar_161 3 3 0.00000000540676
Theobroma cacao Chromosome_1 6 CH_tca_523 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_scaf_74 6 CH_tpr_154 3 3 0.00000000859546
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_181 3 3 0.0000000518115
Vigna mungo CM024071.1 6 CH_vmu_62 4 6 0.0000000000121397
Vitis vinifera chr7 6 CH_vvi_219 3 3 0.0000000086787

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001