Functional clusters

Information

  • Type InterPro
  • Description Transcription termination factor, mitochondrial/chloroplastic

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 5 CH_aar_154 4 4 0.000000134209
Aethionema arabicum LG-10 5 CH_aar_259 3 3 0.0000891475
Aethionema arabicum LG-1 5 CH_aar_92 5 5 0.000000000195935
Aethionema arabicum LG-1 5 CH_aar_93 5 5 0.000000000195935
Acer truncatum chr5 5 CH_acertr_48 7 8 0.00000000000000173763
Acer truncatum chr6 5 CH_acertr_658 3 3 0.0000794703
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_883 3 3 0.0000483877
Amborella trichopoda AmTr_v1.0_scaffold00126 5 CH_atr_226 4 4 0.000000268295
Amborella trichopoda AmTr_v1.0_scaffold00010 5 CH_atr_23 15 52 1.02764e-25
Brassica carinata ChrC04 5 CH_bca_296 5 7 0.000000000953562
Brassica napus C01 5 CH_bna_128 6 7 0.000000000000321508
Brassica napus A09 5 CH_bna_234 5 6 0.000000000326292
Brassica napus C09 5 CH_bna_280 5 7 0.00000000114121
Brassica oleracea C1 5 CH_bol_242 4 5 0.0000000854355
Brassica rapa A01 5 CH_bra_320 3 3 0.0000317389
Beta vulgaris Chr7_EL10_PGA_scaffold5 5 CH_bvu_454 3 6 0.000415355
Camellia sinensis var. sinensis Chr11 5 CH_camsi_254 5 5 0.0000000000567856
Camellia sinensis var. sinensis Chr9 5 CH_camsi_30 12 30 2.62216e-24
Camellia sinensis var. sinensis Chr12 5 CH_camsi_489 5 13 0.0000000725908
Cicer arietinum L. Ca_LG1_v3 5 CH_car_16 6 7 0.00000000000146642
Cicer arietinum L. Ca_LG1_v3 5 CH_car_24 7 20 0.0000000000205783
Corylus avellana 1 5 CH_cav_405 6 60 0.0000146597
Coffea canephora chr10 5 CH_ccan_353 3 16 0.0000350263
Ceratophyllum demersum 8 5 CH_cde_140 4 8 0.00000324408
Ceratophyllum demersum 2 5 CH_cde_377 3 5 0.000419868
Carpinus fangiana Cfa04 5 CH_cfa_380 4 16 0.0000412641
Carpinus fangiana Cfa02 5 CH_cfa_438 3 4 0.000100594
Cardamine hirsuta Chr2 5 CH_chi_6 17 38 1.06512e-35
Carya illinoinensis Chr08 5 CH_cil_529 4 9 0.0000328463
Carya illinoinensis Chr07 5 CH_cil_834 3 4 0.000638193
Chenopodium quinoa C_Quinoa_Scaffold_1001 5 CH_cqu_29 12 23 8.9754e-24
Chenopodium quinoa C_Quinoa_Scaffold_2858 5 CH_cqu_35 13 43 3.2576e-22
Cucumis sativus L. chr5 5 CH_csa_15 17 72 1.78478e-26
Cucumis sativus L. chr3 5 CH_csa_38 10 18 1.44297e-18
Daucus carota DCARv2_Chr1 5 CH_dca_182 4 4 0.0000000318494
Daucus carota DCARv2_Chr1 5 CH_dca_215 5 17 0.000000180586
Davidia involucrata GWHABJS00000010 5 CH_din_432 3 3 0.0000291528
Durio zibethinus NW_019167960.1 5 CH_dzi_183 5 13 0.000000103892
Durio zibethinus NW_019168492.1 5 CH_dzi_77 6 8 0.00000000000242293
Durio zibethinus NW_019167904.1 5 CH_dzi_81 8 39 0.0000000000055157
Durio zibethinus NW_019168026.1 5 CH_dzi_90 6 10 0.0000000000181386
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_440 4 15 0.0000100858
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_732 3 7 0.000428373
Eucalyptus grandis Chr02 5 CH_egr_1107 4 15 0.0000743193
Eucalyptus grandis Chr08 5 CH_egr_250 7 8 4.71887e-16
Eucalyptus grandis Chr07 5 CH_egr_683 4 4 0.0000000549714
Erythranthe guttata scaffold_8 5 CH_egut_295 4 4 0.000000172582
Eutrema salsugineum scaffold_8 5 CH_esa_3 18 26 8.54934e-41
Fragaria vesca Fvb6 5 CH_fve_256 6 21 0.000000011916
Fragaria vesca Fvb2 5 CH_fve_419 4 6 0.00000194516
Fragaria vesca Fvb4 5 CH_fve_576 3 3 0.000095911
Gossypium hirsutum A01 5 CH_ghi_140 7 7 2.70441e-16
Gossypium hirsutum D01 5 CH_ghi_65 10 10 3.95286e-25
Glycine max Gm18 5 CH_gma_140 6 10 0.0000000000150161
Glycine max Gm15 5 CH_gma_186 6 15 0.000000000356339
Glycine max Gm08 5 CH_gma_312 5 12 0.0000000561569
Gossypium raimondii Chr02 5 CH_gra_74 7 7 7.16746e-17
Lotus japonicus chr6 5 CH_lja_198 4 5 0.000000172454
Lonicera japonica GWHAAZE00000004 5 CH_lonja_156 7 8 0.00000000000000213854
Lonicera japonica GWHAAZE00000003 5 CH_lonja_195 6 6 0.000000000000212759
Lonicera japonica GWHAAZE00000009 5 CH_lonja_646 4 9 0.0000157138
Magnolia biondii Chr19 5 CH_mbi_47 8 8 2.91244e-20
Malus domestica Chr09 5 CH_mdo_1026 3 3 0.000118078
Manihot esculenta Chromosome01 5 CH_mes_219 5 6 0.00000000119188
Manihot esculenta Chromosome17 5 CH_mes_296 4 4 0.000000144737
Manihot esculenta Chromosome04 5 CH_mes_530 3 3 0.00010305
Manihot esculenta Chromosome11 5 CH_mes_88 8 10 2.0203e-17
Medicago truncatula chr2 5 CH_mtr_1261 3 4 0.000401842
Medicago truncatula chr2 5 CH_mtr_14 22 69 1.24074e-43
Medicago truncatula chr4 5 CH_mtr_651 4 5 0.00000061913
Nelumbo nucifera chr7 5 CH_nnu_217 5 20 0.000000270183
Nelumbo nucifera chr5 5 CH_nnu_239 4 7 0.000000773548
Petunia axillaris Peaxi162Scf00756 5 CH_pax_106 5 6 0.000000000306591
Petunia axillaris Peaxi162Scf00267 5 CH_pax_381 3 3 0.000044432
Petunia axillaris Peaxi162Scf00154 5 CH_pax_64 6 9 0.00000000000437174
Punica granatum NC_045127.1 5 CH_pgr_85 6 8 0.000000000000711014
Prunus persica Pp02 5 CH_ppe_273 7 42 0.00000000656725
Prunus persica Pp01 5 CH_ppe_469 4 8 0.00000793205
Prunus persica Pp07 5 CH_ppe_620 3 3 0.0000824705
Pisum sativum chr5LG3 5 CH_psa_393 3 3 0.0000267144
Pisum sativum chr1LG6 5 CH_psa_51 9 38 8.78659e-16
Papaver somniferum NC_039366.1 5 CH_pso_55 11 33 2.19909e-20
Papaver somniferum NC_039368.1 5 CH_pso_59 10 21 4.17714e-20
Papaver somniferum NW_020650971.1 5 CH_pso_703 4 8 0.00000795088
Populus trichocarpa Chr04 5 CH_ptr_266 5 8 0.0000000147739
Populus trichocarpa Chr01 5 CH_ptr_48 10 13 3.48402e-22
Populus trichocarpa Chr03 5 CH_ptr_566 4 12 0.0000898386
Populus trichocarpa Chr16 5 CH_ptr_583 3 3 0.000124303
Phaseolus vulgaris Chr09 5 CH_pvu_411 3 3 0.0000529991
Phaseolus vulgaris Chr06 5 CH_pvu_564 5 58 0.000309112
Quercus lobata 12 5 CH_qlo_228 9 17 1.83662e-17
Quercus lobata 6 5 CH_qlo_72 12 15 6.58048e-28
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_233 7 13 0.000000000000265275
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_53 15 58 5.45324e-27
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_540 5 11 0.0000000563099
Rhododendron simsii chr08 5 CH_rsi_179 6 7 0.000000000000791921
Striga asiatica scaffold1 5 CH_sas_1 11 18 4.21152e-23
Striga asiatica scaffold2 5 CH_sas_106 4 8 0.0000117737
Sechium edule LG10 5 CH_sed_423 3 4 0.000325204
Sequoiadendron giganteum chr10 5 CH_sgi_109 14 31 1.09578e-26
Sequoiadendron giganteum chr4 5 CH_sgi_1110 5 10 0.000000170273
Sequoiadendron giganteum chr10 5 CH_sgi_2188 5 35 0.00021167
Sequoiadendron giganteum chr2 5 CH_sgi_2194 3 3 0.000230763
Sequoiadendron giganteum chr10 5 CH_sgi_2195 3 3 0.000230763
Sequoiadendron giganteum chr2 5 CH_sgi_2641 3 4 0.000921831
Schrenkiella parvula ch2-2 5 CH_spa_16 7 7 1.93253e-16
Solanum pennellii Spenn-ch04 5 CH_spe_35 7 7 1.24183e-18
Solanum tuberosum ST4.03ch04 5 CH_stu_47 8 8 6.88414e-21
Trochodendron aralioides group1 5 CH_tar_31 8 8 3.99626e-19
Trochodendron aralioides group11 5 CH_tar_575 3 3 0.0000996141
Tarenaya hassleriana NW_010966177.1 5 CH_tha_106 4 4 0.000000138789
Tarenaya hassleriana NW_010967059.1 5 CH_tha_209 3 3 0.0000969218
Tarenaya hassleriana NW_010968505.1 5 CH_tha_282 3 4 0.000387257
Tarenaya hassleriana NW_010965122.1 5 CH_tha_283 3 4 0.000387257
Tarenaya hassleriana NW_010966881.1 5 CH_tha_66 5 6 0.00000000116204
Trifolium pratense Tp57577_TGAC_v2_LG5 5 CH_tpr_176 4 4 0.000000019456
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_417 3 3 0.0000223482
Tripterygium wilfordii NC_052249.1 5 CH_twi_259 4 7 0.00000417731
Tripterygium wilfordii NC_052248.1 5 CH_twi_33 7 7 2.36282e-16
Utricularia gibba unitig_578 5 CH_ugi_100 3 3 0.0000262553
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_281 4 5 0.00000134538
Vitis vinifera chr7 5 CH_vvi_281 4 5 0.0000000986267
Aethionema arabicum LG-8 6 CH_aar_154 4 4 0.000000134209
Aethionema arabicum LG-10 6 CH_aar_259 3 3 0.0000891475
Aethionema arabicum LG-1 6 CH_aar_92 5 5 0.000000000195935
Aethionema arabicum LG-1 6 CH_aar_93 5 5 0.000000000195935
Acer truncatum chr5 6 CH_acertr_48 7 8 0.00000000000000173763
Acer truncatum chr6 6 CH_acertr_658 3 3 0.0000794703
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_883 3 3 0.0000483877
Amborella trichopoda AmTr_v1.0_scaffold00126 6 CH_atr_226 4 4 0.000000268295
Amborella trichopoda AmTr_v1.0_scaffold00010 6 CH_atr_23 15 52 1.02764e-25
Brassica carinata ChrC04 6 CH_bca_296 5 7 0.000000000953562
Brassica napus C01 6 CH_bna_128 6 7 0.000000000000321508
Brassica napus A09 6 CH_bna_234 5 6 0.000000000326292
Brassica napus C09 6 CH_bna_280 5 7 0.00000000114121
Brassica oleracea C1 6 CH_bol_242 4 5 0.0000000854355
Brassica rapa A01 6 CH_bra_320 3 3 0.0000317389
Beta vulgaris Chr7_EL10_PGA_scaffold5 6 CH_bvu_454 3 6 0.000415355
Camellia sinensis var. sinensis Chr11 6 CH_camsi_254 5 5 0.0000000000567856
Camellia sinensis var. sinensis Chr9 6 CH_camsi_30 12 30 2.62216e-24
Camellia sinensis var. sinensis Chr12 6 CH_camsi_489 5 13 0.0000000725908
Cicer arietinum L. Ca_LG1_v3 6 CH_car_16 6 7 0.00000000000146642
Cicer arietinum L. Ca_LG1_v3 6 CH_car_24 7 20 0.0000000000205783
Corylus avellana 1 6 CH_cav_405 6 60 0.0000146597
Coffea canephora chr10 6 CH_ccan_353 3 16 0.0000350263
Ceratophyllum demersum 8 6 CH_cde_140 4 8 0.00000324408
Ceratophyllum demersum 2 6 CH_cde_377 3 5 0.000419868
Carpinus fangiana Cfa04 6 CH_cfa_380 4 16 0.0000412641
Carpinus fangiana Cfa02 6 CH_cfa_438 3 4 0.000100594
Cardamine hirsuta Chr2 6 CH_chi_6 17 38 1.06512e-35
Carya illinoinensis Chr08 6 CH_cil_529 4 9 0.0000328463
Carya illinoinensis Chr07 6 CH_cil_834 3 4 0.000638193
Cucumis melo chr06 6 CH_cme_280 4 13 0.0000489407
Cucumis melo chr10 6 CH_cme_47 11 71 7.04235e-16
Chenopodium quinoa C_Quinoa_Scaffold_1001 6 CH_cqu_29 12 23 8.9754e-24
Chenopodium quinoa C_Quinoa_Scaffold_2858 6 CH_cqu_35 13 43 3.2576e-22
Cucumis sativus L. chr5 6 CH_csa_15 17 72 1.78478e-26
Cucumis sativus L. chr3 6 CH_csa_38 10 18 1.44297e-18
Daucus carota DCARv2_Chr1 6 CH_dca_182 4 4 0.0000000318494
Daucus carota DCARv2_Chr1 6 CH_dca_215 5 17 0.000000180586
Davidia involucrata GWHABJS00000010 6 CH_din_432 3 3 0.0000291528
Durio zibethinus NW_019167960.1 6 CH_dzi_183 5 13 0.000000103892
Durio zibethinus NW_019168492.1 6 CH_dzi_77 6 8 0.00000000000242293
Durio zibethinus NW_019167904.1 6 CH_dzi_81 8 39 0.0000000000055157
Durio zibethinus NW_019168026.1 6 CH_dzi_90 6 10 0.0000000000181386
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_440 4 15 0.0000100858
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_732 3 7 0.000428373
Eucalyptus grandis Chr02 6 CH_egr_1107 4 15 0.0000743193
Eucalyptus grandis Chr08 6 CH_egr_250 7 8 4.71887e-16
Eucalyptus grandis Chr07 6 CH_egr_683 4 4 0.0000000549714
Erythranthe guttata scaffold_8 6 CH_egut_295 4 4 0.000000172582
Eutrema salsugineum scaffold_8 6 CH_esa_3 18 26 8.54934e-41
Fragaria x ananassa Fvb2-4 6 CH_fan_343 7 55 0.000000133557
Fragaria x ananassa Fvb6-1 6 CH_fan_667 6 56 0.0000167114
Fragaria vesca Fvb6 6 CH_fve_256 6 21 0.000000011916
Fragaria vesca Fvb2 6 CH_fve_419 4 6 0.00000194516
Fragaria vesca Fvb4 6 CH_fve_576 3 3 0.000095911
Gossypium hirsutum A01 6 CH_ghi_140 7 7 2.70441e-16
Gossypium hirsutum D01 6 CH_ghi_65 10 10 3.95286e-25
Glycine max Gm18 6 CH_gma_140 6 10 0.0000000000150161
Glycine max Gm15 6 CH_gma_186 6 15 0.000000000356339
Glycine max Gm08 6 CH_gma_312 5 12 0.0000000561569
Gossypium raimondii Chr02 6 CH_gra_74 7 7 7.16746e-17
Lotus japonicus chr6 6 CH_lja_198 4 5 0.000000172454
Lonicera japonica GWHAAZE00000004 6 CH_lonja_156 7 8 0.00000000000000213854
Lonicera japonica GWHAAZE00000003 6 CH_lonja_195 6 6 0.000000000000212759
Lonicera japonica GWHAAZE00000009 6 CH_lonja_646 4 9 0.0000157138
Magnolia biondii Chr19 6 CH_mbi_47 8 8 2.91244e-20
Malus domestica Chr09 6 CH_mdo_1026 3 3 0.000118078
Manihot esculenta Chromosome01 6 CH_mes_219 5 6 0.00000000119188
Manihot esculenta Chromosome17 6 CH_mes_296 4 4 0.000000144737
Manihot esculenta Chromosome04 6 CH_mes_530 3 3 0.00010305
Manihot esculenta Chromosome11 6 CH_mes_88 8 10 2.0203e-17
Medicago truncatula chr2 6 CH_mtr_1261 3 4 0.000401842
Medicago truncatula chr2 6 CH_mtr_14 22 69 1.24074e-43
Medicago truncatula chr4 6 CH_mtr_651 4 5 0.00000061913
Nelumbo nucifera chr7 6 CH_nnu_217 5 20 0.000000270183
Nelumbo nucifera chr5 6 CH_nnu_239 4 7 0.000000773548
Petunia axillaris Peaxi162Scf00756 6 CH_pax_106 5 6 0.000000000306591
Petunia axillaris Peaxi162Scf00267 6 CH_pax_381 3 3 0.000044432
Petunia axillaris Peaxi162Scf00154 6 CH_pax_64 6 9 0.00000000000437174
Punica granatum NC_045127.1 6 CH_pgr_85 6 8 0.000000000000711014
Prunus persica Pp02 6 CH_ppe_273 7 42 0.00000000656725
Prunus persica Pp01 6 CH_ppe_469 4 8 0.00000793205
Prunus persica Pp07 6 CH_ppe_620 3 3 0.0000824705
Pisum sativum chr5LG3 6 CH_psa_393 3 3 0.0000267144
Pisum sativum chr1LG6 6 CH_psa_51 9 38 8.78659e-16
Papaver somniferum NC_039366.1 6 CH_pso_55 11 33 2.19909e-20
Papaver somniferum NC_039368.1 6 CH_pso_59 10 21 4.17714e-20
Papaver somniferum NW_020650971.1 6 CH_pso_703 4 8 0.00000795088
Populus trichocarpa Chr04 6 CH_ptr_266 5 8 0.0000000147739
Populus trichocarpa Chr01 6 CH_ptr_48 10 13 3.48402e-22
Populus trichocarpa Chr03 6 CH_ptr_566 4 12 0.0000898386
Populus trichocarpa Chr16 6 CH_ptr_583 3 3 0.000124303
Phaseolus vulgaris Chr09 6 CH_pvu_411 3 3 0.0000529991
Phaseolus vulgaris Chr06 6 CH_pvu_564 5 58 0.000309112
Quercus lobata 12 6 CH_qlo_228 9 17 1.83662e-17
Quercus lobata 6 6 CH_qlo_72 12 15 6.58048e-28
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_233 7 13 0.000000000000265275
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_53 15 58 5.45324e-27
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_540 5 11 0.0000000563099
Rhododendron simsii chr08 6 CH_rsi_179 6 7 0.000000000000791921
Striga asiatica scaffold1 6 CH_sas_1 11 18 4.21152e-23
Striga asiatica scaffold2 6 CH_sas_106 4 8 0.0000117737
Sechium edule LG10 6 CH_sed_423 3 4 0.000325204
Sequoiadendron giganteum chr10 6 CH_sgi_109 14 31 1.09578e-26
Sequoiadendron giganteum chr4 6 CH_sgi_1110 5 10 0.000000170273
Sequoiadendron giganteum chr10 6 CH_sgi_2188 5 35 0.00021167
Sequoiadendron giganteum chr2 6 CH_sgi_2194 3 3 0.000230763
Sequoiadendron giganteum chr10 6 CH_sgi_2195 3 3 0.000230763
Sequoiadendron giganteum chr2 6 CH_sgi_2641 3 4 0.000921831
Schrenkiella parvula ch2-2 6 CH_spa_16 7 7 1.93253e-16
Solanum pennellii Spenn-ch04 6 CH_spe_35 7 7 1.24183e-18
Solanum tuberosum ST4.03ch04 6 CH_stu_47 8 8 6.88414e-21
Trochodendron aralioides group1 6 CH_tar_31 8 8 3.99626e-19
Trochodendron aralioides group11 6 CH_tar_575 3 3 0.0000996141
Tarenaya hassleriana NW_010966177.1 6 CH_tha_106 4 4 0.000000138789
Tarenaya hassleriana NW_010967059.1 6 CH_tha_209 3 3 0.0000969218
Tarenaya hassleriana NW_010968505.1 6 CH_tha_282 3 4 0.000387257
Tarenaya hassleriana NW_010965122.1 6 CH_tha_283 3 4 0.000387257
Tarenaya hassleriana NW_010966881.1 6 CH_tha_66 5 6 0.00000000116204
Trifolium pratense Tp57577_TGAC_v2_LG5 6 CH_tpr_176 4 4 0.000000019456
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_417 3 3 0.0000223482
Tripterygium wilfordii NC_052249.1 6 CH_twi_259 4 7 0.00000417731
Tripterygium wilfordii NC_052248.1 6 CH_twi_33 7 7 2.36282e-16
Utricularia gibba unitig_578 6 CH_ugi_100 3 3 0.0000262553
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_281 4 5 0.00000134538
Vitis vinifera chr7 6 CH_vvi_281 4 5 0.0000000986267

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001