Functional clusters

Information

  • Type InterPro
  • Description WRKY domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 5 CH_aar_46 9 12 1.26549e-16
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 5 CH_amhyb_69 5 6 0.00000000309295
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 5 CH_arhy_803 4 5 0.0000151652
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 5 CH_arhy_975 5 20 0.000116817
Brassica carinata ChrC01 5 CH_bca_980 4 4 0.0000061589
Brassica oleracea C3 5 CH_bol_871 3 3 0.000781019
Capsicum annuum PGAv.1.6.scaffold792 5 CH_can_327 4 4 0.00000038956
Glycine max Gm13 5 CH_gma_476 4 4 0.00000633741
Helianthus annuus HanXRQChr14 5 CH_han_742 4 6 0.0000198568
Lactuca sativa Lsat_1_v8_lg_9 5 CH_lsa_397 4 4 0.00000049522
Lactuca sativa Lsat_1_v8_lg_2 5 CH_lsa_742 3 3 0.000267611
Magnolia biondii Chr15 5 CH_mbi_835 3 3 0.000109171
Malus domestica Chr12 5 CH_mdo_886 4 8 0.0000759046
Olea europaea chr19 5 CH_oeu_207 4 4 0.00000209819
Olea europaea chr8 5 CH_oeu_208 4 4 0.00000209819
Olea europaea chr11 5 CH_oeu_652 3 3 0.000778326
Oryza sativa ssp. japonica chr12 5 CH_osa_210 5 6 0.000000011464
Oryza sativa ssp. japonica chr11 5 CH_osa_408 4 6 0.0000133758
Oryza sativa ssp. japonica chr01 5 CH_osa_409 4 6 0.0000133758
Oryza sativa ssp. japonica chr05 5 CH_osa_681 3 3 0.000413235
Prunus persica Pp06 5 CH_ppe_710 3 3 0.000257562
Pisum sativum chr5LG3 5 CH_psa_643 3 3 0.000361471
Pisum sativum chr6LG2 5 CH_psa_644 3 3 0.000361471
Papaver somniferum NW_020631041.1 5 CH_pso_20 13 22 4.92123e-28
Papaver somniferum NC_039368.1 5 CH_pso_21 13 22 4.92123e-28
Phaseolus vulgaris Chr05 5 CH_pvu_707 3 3 0.000983743
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_938 4 10 0.0000323048
Rhododendron simsii chr10 5 CH_rsi_752 4 12 0.00019232
Sequoiadendron giganteum chr1 5 CH_sgi_1298 4 5 0.00000124838
Sequoiadendron giganteum chr3 5 CH_sgi_199 10 16 1.83788e-20
Sequoiadendron giganteum chr1 5 CH_sgi_2164 3 3 0.000162898
Sequoiadendron giganteum chr2 5 CH_sgi_283 8 10 5.29008e-17
Sequoiadendron giganteum chr3 5 CH_sgi_458 6 6 0.000000000000561015
Sequoiadendron giganteum chr3 5 CH_sgi_866 5 7 0.00000000790844
Trochodendron aralioides group3 5 CH_tar_932 4 11 0.000895396
Theobroma cacao Chromosome_3 5 CH_tca_645 3 3 0.000275339
Vanilla planifolia CM028161.1 5 CH_vpl_584 3 3 0.000410423
Zea mays 3 5 CH_zma_294 4 5 0.0000181608
Aethionema arabicum LG-4 6 CH_aar_46 9 12 1.26549e-16
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 6 CH_amhyb_69 5 6 0.00000000309295
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 6 CH_arhy_803 4 5 0.0000151652
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 6 CH_arhy_975 5 20 0.000116817
Brassica carinata ChrC01 6 CH_bca_980 4 4 0.0000061589
Brassica oleracea C3 6 CH_bol_871 3 3 0.000781019
Capsicum annuum PGAv.1.6.scaffold792 6 CH_can_327 4 4 0.00000038956
Fragaria x ananassa Fvb6-1 6 CH_fan_931 4 8 0.000230816
Glycine max Gm13 6 CH_gma_476 4 4 0.00000633741
Helianthus annuus HanXRQChr14 6 CH_han_742 4 6 0.0000198568
Lactuca sativa Lsat_1_v8_lg_9 6 CH_lsa_397 4 4 0.00000049522
Lactuca sativa Lsat_1_v8_lg_2 6 CH_lsa_742 3 3 0.000267611
Magnolia biondii Chr15 6 CH_mbi_835 3 3 0.000109171
Malus domestica Chr12 6 CH_mdo_886 4 8 0.0000759046
Olea europaea chr19 6 CH_oeu_207 4 4 0.00000209819
Olea europaea chr8 6 CH_oeu_208 4 4 0.00000209819
Olea europaea chr11 6 CH_oeu_652 3 3 0.000778326
Oryza sativa ssp. japonica chr12 6 CH_osa_210 5 6 0.000000011464
Oryza sativa ssp. japonica chr11 6 CH_osa_408 4 6 0.0000133758
Oryza sativa ssp. japonica chr01 6 CH_osa_409 4 6 0.0000133758
Oryza sativa ssp. japonica chr05 6 CH_osa_681 3 3 0.000413235
Prunus persica Pp06 6 CH_ppe_710 3 3 0.000257562
Pisum sativum chr5LG3 6 CH_psa_643 3 3 0.000361471
Pisum sativum chr6LG2 6 CH_psa_644 3 3 0.000361471
Papaver somniferum NW_020631041.1 6 CH_pso_20 13 22 4.92123e-28
Papaver somniferum NC_039368.1 6 CH_pso_21 13 22 4.92123e-28
Phaseolus vulgaris Chr05 6 CH_pvu_707 3 3 0.000983743
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_938 4 10 0.0000323048
Rhododendron simsii chr10 6 CH_rsi_752 4 12 0.00019232
Sequoiadendron giganteum chr1 6 CH_sgi_1298 4 5 0.00000124838
Sequoiadendron giganteum chr3 6 CH_sgi_199 10 16 1.83788e-20
Sequoiadendron giganteum chr1 6 CH_sgi_2164 3 3 0.000162898
Sequoiadendron giganteum chr2 6 CH_sgi_283 8 10 5.29008e-17
Sequoiadendron giganteum chr3 6 CH_sgi_458 6 6 0.000000000000561015
Sequoiadendron giganteum chr3 6 CH_sgi_866 5 7 0.00000000790844
Trochodendron aralioides group3 6 CH_tar_932 4 11 0.000895396
Theobroma cacao Chromosome_3 6 CH_tca_645 3 3 0.000275339
Vanilla planifolia CM028161.1 6 CH_vpl_584 3 3 0.000410423
Zea mays 3 6 CH_zma_294 4 5 0.0000181608

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001