Functional clusters
Information
- Type InterPro
- Description Knottin, scorpion toxin-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 5 | CH_acertr_299 | 3 | 3 | 0.0000001491 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_89 | 5 | 5 | 0.00000000000605159 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_522 | 3 | 3 | 0.000000221838 |
| Brassica carinata | ChrC08 | 5 | CH_bca_546 | 4 | 6 | 0.000000118903 |
| Brassica carinata | ChrB05 | 5 | CH_bca_682 | 4 | 8 | 0.000000554415 |
| Brassica napus | C06 | 5 | CH_bna_1409 | 3 | 6 | 0.000589908 |
| Brassica napus | A07 | 5 | CH_bna_448 | 4 | 5 | 0.0000000931615 |
| Brassica napus | A05 | 5 | CH_bna_662 | 4 | 9 | 0.00000234292 |
| Brassica napus | A02 | 5 | CH_bna_909 | 3 | 3 | 0.0000295381 |
| Brassica napus | C02 | 5 | CH_bna_910 | 3 | 3 | 0.0000295381 |
| Brassica napus | C04 | 5 | CH_bna_911 | 3 | 4 | 0.0000295381 |
| Brassica oleracea | C2 | 5 | CH_bol_378 | 3 | 3 | 0.00000246801 |
| Brassica oleracea | C8 | 5 | CH_bol_582 | 3 | 7 | 0.0000862942 |
| Brassica rapa | A05 | 5 | CH_bra_112 | 4 | 4 | 0.00000000486068 |
| Brassica rapa | A02 | 5 | CH_bra_277 | 3 | 3 | 0.00000905719 |
| Brassica rapa | A07 | 5 | CH_bra_329 | 3 | 4 | 0.0000362134 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_459 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold1126 | 5 | CH_can_432 | 3 | 3 | 0.00000696127 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_178 | 4 | 4 | 0.0000000000579666 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_40 | 9 | 14 | 3.01555e-21 |
| Carya illinoinensis | Chr04 | 5 | CH_cil_561 | 2 | 2 | 0.0000619828 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_48 | 7 | 7 | 1.42531e-17 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_209 | 4 | 4 | 0.00000000354443 |
| Erythranthe guttata | scaffold_8 | 5 | CH_egut_394 | 3 | 3 | 0.00000648985 |
| Eutrema salsugineum | scaffold_9 | 5 | CH_esa_140 | 4 | 4 | 0.00000000969154 |
| Eutrema salsugineum | scaffold_6 | 5 | CH_esa_274 | 3 | 3 | 0.0000133957 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_180 | 5 | 17 | 0.000000000257733 |
| Gossypium raimondii | Chr02 | 5 | CH_gra_101 | 5 | 5 | 0.0000000000000286272 |
| Gossypium raimondii | Chr02 | 5 | CH_gra_299 | 3 | 3 | 0.00000071136 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_651 | 3 | 3 | 0.00000515188 |
| Lupinus albus | Lalb_Chr12 | 5 | CH_lal_267 | 4 | 16 | 0.00000143182 |
| Malus domestica | Chr16 | 5 | CH_mdo_311 | 4 | 4 | 0.00000000388573 |
| Malus domestica | Chr14 | 5 | CH_mdo_498 | 4 | 8 | 0.000000271568 |
| Manihot esculenta | Chromosome18 | 5 | CH_mes_679 | 2 | 2 | 0.000610631 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_188 | 3 | 3 | 0.0000000696075 |
| Olea europaea | chr20 | 5 | CH_oeu_316 | 2 | 2 | 0.0000533789 |
| Petunia axillaris | Peaxi162Scf00324 | 5 | CH_pax_47 | 5 | 5 | 0.000000000000236552 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_557 | 2 | 2 | 0.000450214 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_204 | 4 | 7 | 0.0000000577118 |
| Populus trichocarpa | scaffold_25 | 5 | CH_ptr_611 | 2 | 2 | 0.0001734 |
| Selenicereus undatus | Scaffold_10417 | 5 | CH_sun_146 | 3 | 8 | 0.0000155126 |
| Zea mays | 9 | 5 | CH_zma_471 | 3 | 16 | 0.000481912 |
| Acer truncatum | chr5 | 6 | CH_acertr_299 | 3 | 3 | 0.0000001491 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_89 | 5 | 5 | 0.00000000000605159 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_522 | 3 | 3 | 0.000000221838 |
| Brassica carinata | ChrC08 | 6 | CH_bca_546 | 4 | 6 | 0.000000118903 |
| Brassica carinata | ChrB05 | 6 | CH_bca_682 | 4 | 8 | 0.000000554415 |
| Brassica napus | C06 | 6 | CH_bna_1409 | 3 | 6 | 0.000589908 |
| Brassica napus | A07 | 6 | CH_bna_448 | 4 | 5 | 0.0000000931615 |
| Brassica napus | A05 | 6 | CH_bna_662 | 4 | 9 | 0.00000234292 |
| Brassica napus | A02 | 6 | CH_bna_909 | 3 | 3 | 0.0000295381 |
| Brassica napus | C02 | 6 | CH_bna_910 | 3 | 3 | 0.0000295381 |
| Brassica napus | C04 | 6 | CH_bna_911 | 3 | 4 | 0.0000295381 |
| Brassica oleracea | C2 | 6 | CH_bol_378 | 3 | 3 | 0.00000246801 |
| Brassica oleracea | C8 | 6 | CH_bol_582 | 3 | 7 | 0.0000862942 |
| Brassica rapa | A05 | 6 | CH_bra_112 | 4 | 4 | 0.00000000486068 |
| Brassica rapa | A02 | 6 | CH_bra_277 | 3 | 3 | 0.00000905719 |
| Brassica rapa | A07 | 6 | CH_bra_329 | 3 | 4 | 0.0000362134 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_459 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold1126 | 6 | CH_can_432 | 3 | 3 | 0.00000696127 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_178 | 4 | 4 | 0.0000000000579666 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_40 | 9 | 14 | 3.01555e-21 |
| Carya illinoinensis | Chr04 | 6 | CH_cil_561 | 2 | 2 | 0.0000619828 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_48 | 7 | 7 | 1.42531e-17 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_209 | 4 | 4 | 0.00000000354443 |
| Erythranthe guttata | scaffold_8 | 6 | CH_egut_394 | 3 | 3 | 0.00000648985 |
| Eutrema salsugineum | scaffold_9 | 6 | CH_esa_140 | 4 | 4 | 0.00000000969154 |
| Eutrema salsugineum | scaffold_6 | 6 | CH_esa_274 | 3 | 3 | 0.0000133957 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_180 | 5 | 17 | 0.000000000257733 |
| Gossypium raimondii | Chr02 | 6 | CH_gra_101 | 5 | 5 | 0.0000000000000286272 |
| Gossypium raimondii | Chr02 | 6 | CH_gra_299 | 3 | 3 | 0.00000071136 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_651 | 3 | 3 | 0.00000515188 |
| Lupinus albus | Lalb_Chr12 | 6 | CH_lal_267 | 4 | 16 | 0.00000143182 |
| Malus domestica | Chr16 | 6 | CH_mdo_311 | 4 | 4 | 0.00000000388573 |
| Malus domestica | Chr14 | 6 | CH_mdo_498 | 4 | 8 | 0.000000271568 |
| Manihot esculenta | Chromosome18 | 6 | CH_mes_679 | 2 | 2 | 0.000610631 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_188 | 3 | 3 | 0.0000000696075 |
| Olea europaea | chr20 | 6 | CH_oeu_316 | 2 | 2 | 0.0000533789 |
| Petunia axillaris | Peaxi162Scf00324 | 6 | CH_pax_47 | 5 | 5 | 0.000000000000236552 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_557 | 2 | 2 | 0.000450214 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_204 | 4 | 7 | 0.0000000577118 |
| Populus trichocarpa | scaffold_25 | 6 | CH_ptr_611 | 2 | 2 | 0.0001734 |
| Selenicereus undatus | Scaffold_10417 | 6 | CH_sun_146 | 3 | 8 | 0.0000155126 |
| Zea mays | 9 | 6 | CH_zma_471 | 3 | 16 | 0.000481912 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |