Functional clusters
Information
- Type InterPro
- Description U box domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_282 | 4 | 4 | 0.000000791048 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_576 | 3 | 3 | 0.000357731 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_577 | 3 | 3 | 0.000357731 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_397 | 3 | 3 | 0.0000488915 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_398 | 3 | 3 | 0.0000488915 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1984 | 3 | 3 | 0.000723298 |
| Brassica carinata | ChrC06 | 5 | CH_bca_1985 | 3 | 3 | 0.000723298 |
| Brassica carinata | ChrB03 | 5 | CH_bca_1986 | 3 | 3 | 0.000723298 |
| Brassica carinata | ChrB07 | 5 | CH_bca_1987 | 3 | 3 | 0.000723298 |
| Brassica napus | A10 | 5 | CH_bna_1454 | 3 | 3 | 0.000720535 |
| Brassica napus | A10 | 5 | CH_bna_1455 | 3 | 3 | 0.000720535 |
| Brassica oleracea | C2 | 5 | CH_bol_712 | 3 | 3 | 0.00029184 |
| Capsicum annuum | PGAv.1.6.scaffold74 | 5 | CH_can_613 | 3 | 3 | 0.000135581 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_460 | 3 | 3 | 0.000225724 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_153 | 7 | 10 | 0.0000000000020256 |
| Corchorus olitorius | AWUE01014940.1 | 5 | CH_col_112 | 3 | 3 | 0.0000582405 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_565 | 3 | 3 | 0.000303282 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_566 | 3 | 3 | 0.000303282 |
| Daucus carota | DCARv2_Chr6 | 5 | CH_dca_576 | 3 | 3 | 0.000292295 |
| Durio zibethinus | NW_019167893.1 | 5 | CH_dzi_563 | 3 | 3 | 0.000676492 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_336 | 7 | 8 | 0.0000000000000961226 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_824 | 4 | 4 | 0.00000105207 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_825 | 4 | 4 | 0.00000105207 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_740 | 3 | 4 | 0.000880548 |
| Eutrema salsugineum | scaffold_5 | 5 | CH_esa_387 | 3 | 3 | 0.000228206 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_308 | 5 | 5 | 0.00000000100582 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_990 | 3 | 3 | 0.00026962 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_460 | 4 | 5 | 0.00000234061 |
| Magnolia biondii | Chr12 | 5 | CH_mbi_690 | 5 | 30 | 0.0000242387 |
| Magnolia biondii | Chr17 | 5 | CH_mbi_805 | 4 | 12 | 0.0000666349 |
| Manihot esculenta | Chromosome08 | 5 | CH_mes_653 | 3 | 3 | 0.000513911 |
| Medicago truncatula | chr1 | 5 | CH_mtr_728 | 4 | 6 | 0.0000021089 |
| Nelumbo nucifera | chr6 | 5 | CH_nnu_478 | 3 | 3 | 0.000198921 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_508 | 3 | 3 | 0.000125943 |
| Quercus lobata | 8 | 5 | CH_qlo_1500 | 3 | 3 | 0.000158781 |
| Quercus lobata | 7 | 5 | CH_qlo_844 | 4 | 4 | 0.000000245944 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_403 | 5 | 6 | 0.0000000010148 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_202 | 6 | 6 | 0.00000000000507139 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_207 | 7 | 12 | 0.00000000000885653 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_725 | 5 | 25 | 0.000114798 |
| Simmondsia chinensis | GWHAASQ00000016 | 5 | CH_sci_60 | 6 | 8 | 0.000000000057215 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_622 | 6 | 9 | 0.000000000046945 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_219 | 5 | 6 | 0.00000000374904 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_304 | 3 | 3 | 0.000257766 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_144 | 5 | 5 | 0.000000000223848 |
| Trochodendron aralioides | group18 | 5 | CH_tar_823 | 3 | 3 | 0.000427561 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_639 | 3 | 3 | 0.000223039 |
| Tarenaya hassleriana | NW_010970490.1 | 5 | CH_tha_279 | 3 | 3 | 0.000350577 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_126 | 5 | 5 | 0.00000000194588 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_282 | 4 | 4 | 0.000000791048 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_576 | 3 | 3 | 0.000357731 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_577 | 3 | 3 | 0.000357731 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_397 | 3 | 3 | 0.0000488915 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_398 | 3 | 3 | 0.0000488915 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1984 | 3 | 3 | 0.000723298 |
| Brassica carinata | ChrC06 | 6 | CH_bca_1985 | 3 | 3 | 0.000723298 |
| Brassica carinata | ChrB03 | 6 | CH_bca_1986 | 3 | 3 | 0.000723298 |
| Brassica carinata | ChrB07 | 6 | CH_bca_1987 | 3 | 3 | 0.000723298 |
| Brassica napus | A10 | 6 | CH_bna_1454 | 3 | 3 | 0.000720535 |
| Brassica napus | A10 | 6 | CH_bna_1455 | 3 | 3 | 0.000720535 |
| Brassica oleracea | C2 | 6 | CH_bol_712 | 3 | 3 | 0.00029184 |
| Capsicum annuum | PGAv.1.6.scaffold74 | 6 | CH_can_613 | 3 | 3 | 0.000135581 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_460 | 3 | 3 | 0.000225724 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_153 | 7 | 10 | 0.0000000000020256 |
| Corchorus olitorius | AWUE01014940.1 | 6 | CH_col_112 | 3 | 3 | 0.0000582405 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_565 | 3 | 3 | 0.000303282 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_566 | 3 | 3 | 0.000303282 |
| Daucus carota | DCARv2_Chr6 | 6 | CH_dca_576 | 3 | 3 | 0.000292295 |
| Durio zibethinus | NW_019167893.1 | 6 | CH_dzi_563 | 3 | 3 | 0.000676492 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_336 | 7 | 8 | 0.0000000000000961226 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_824 | 4 | 4 | 0.00000105207 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_825 | 4 | 4 | 0.00000105207 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_740 | 3 | 4 | 0.000880548 |
| Eutrema salsugineum | scaffold_5 | 6 | CH_esa_387 | 3 | 3 | 0.000228206 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_308 | 5 | 5 | 0.00000000100582 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_990 | 3 | 3 | 0.00026962 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_460 | 4 | 5 | 0.00000234061 |
| Magnolia biondii | Chr12 | 6 | CH_mbi_690 | 5 | 30 | 0.0000242387 |
| Magnolia biondii | Chr17 | 6 | CH_mbi_805 | 4 | 12 | 0.0000666349 |
| Manihot esculenta | Chromosome08 | 6 | CH_mes_653 | 3 | 3 | 0.000513911 |
| Medicago truncatula | chr1 | 6 | CH_mtr_728 | 4 | 6 | 0.0000021089 |
| Nelumbo nucifera | chr6 | 6 | CH_nnu_478 | 3 | 3 | 0.000198921 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_508 | 3 | 3 | 0.000125943 |
| Quercus lobata | 8 | 6 | CH_qlo_1500 | 3 | 3 | 0.000158781 |
| Quercus lobata | 7 | 6 | CH_qlo_844 | 4 | 4 | 0.000000245944 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_403 | 5 | 6 | 0.0000000010148 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_202 | 6 | 6 | 0.00000000000507139 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_207 | 7 | 12 | 0.00000000000885653 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_725 | 5 | 25 | 0.000114798 |
| Simmondsia chinensis | GWHAASQ00000016 | 6 | CH_sci_60 | 6 | 8 | 0.000000000057215 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_622 | 6 | 9 | 0.000000000046945 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_219 | 5 | 6 | 0.00000000374904 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_304 | 3 | 3 | 0.000257766 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_144 | 5 | 5 | 0.000000000223848 |
| Trochodendron aralioides | group18 | 6 | CH_tar_823 | 3 | 3 | 0.000427561 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_639 | 3 | 3 | 0.000223039 |
| Tarenaya hassleriana | NW_010970490.1 | 6 | CH_tha_279 | 3 | 3 | 0.000350577 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_126 | 5 | 5 | 0.00000000194588 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |