Functional clusters
Information
- Type InterPro
- Description Matrin/U1-C-like, C2H2-type zinc finger
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr6 | 5 | CH_acertr_394 | 3 | 3 | 0.00000271362 |
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_257 | 3 | 3 | 0.00000934909 |
| Brassica carinata | ChrC06 | 5 | CH_bca_713 | 5 | 42 | 0.000000758211 |
| Brassica napus | C07 | 5 | CH_bna_305 | 4 | 4 | 0.00000000236774 |
| Brassica napus | A03 | 5 | CH_bna_892 | 3 | 4 | 0.0000255043 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 5 | CH_bvu_311 | 5 | 69 | 0.0000328908 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_1145 | 4 | 68 | 0.000232717 |
| Glycine max | Gm17 | 5 | CH_gma_502 | 3 | 3 | 0.0000129314 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_735 | 3 | 7 | 0.000245252 |
| Oryza sativa ssp. japonica | chr09 | 5 | CH_osa_335 | 3 | 3 | 0.00000190363 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_703 | 3 | 10 | 0.000556969 |
| Selenicereus undatus | Scaffold_33678 | 5 | CH_sun_164 | 4 | 28 | 0.0000713587 |
| Zea mays | 7 | 5 | CH_zma_103 | 5 | 11 | 0.00000000100421 |
| Acer truncatum | chr6 | 6 | CH_acertr_394 | 3 | 3 | 0.00000271362 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_257 | 3 | 3 | 0.00000934909 |
| Brassica carinata | ChrC06 | 6 | CH_bca_713 | 5 | 42 | 0.000000758211 |
| Brassica napus | C07 | 6 | CH_bna_305 | 4 | 4 | 0.00000000236774 |
| Brassica napus | A03 | 6 | CH_bna_892 | 3 | 4 | 0.0000255043 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 6 | CH_bvu_311 | 5 | 69 | 0.0000328908 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_1145 | 4 | 68 | 0.000232717 |
| Glycine max | Gm17 | 6 | CH_gma_502 | 3 | 3 | 0.0000129314 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_735 | 3 | 7 | 0.000245252 |
| Oryza sativa ssp. japonica | chr09 | 6 | CH_osa_335 | 3 | 3 | 0.00000190363 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_703 | 3 | 10 | 0.000556969 |
| Selenicereus undatus | Scaffold_33678 | 6 | CH_sun_164 | 4 | 28 | 0.0000713587 |
| Zea mays | 7 | 6 | CH_zma_103 | 5 | 11 | 0.00000000100421 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |