Functional clusters

Information

  • Type InterPro
  • Description Cation transporter

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group25 5 CH_ach_335 2 2 0.000162964
Avicennia marina ScioBoG_52287_HRSCAF_52434 5 CH_ama_36 3 4 0.0000000446052
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 5 CH_arhy_442 3 3 0.0000000268895
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_705 3 11 0.00000443504
Brassica carinata ChrB01 5 CH_bca_1884 2 2 0.00059854
Brassica napus A09 5 CH_bna_1355 2 2 0.000519726
Brassica rapa A09 5 CH_bra_456 2 2 0.000257588
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_138 4 15 0.0000000116114
Camellia sinensis var. sinensis Chr14 5 CH_camsi_1314 2 5 0.000458516
Carpinus fangiana Cfa08 5 CH_cfa_579 2 3 0.000681569
Cardamine hirsuta Chr8 5 CH_chi_762 2 5 0.000691133
Citrullus lanatus CG_Chr06 5 CH_cla_265 2 3 0.000266123
Capsella rubella scaffold_6 5 CH_cru_97 4 4 0.00000000000117273
Cucumis sativus L. chr1 5 CH_csa_135 3 3 0.0000000104528
Eucalyptus grandis Chr03 5 CH_egr_308 6 20 0.0000000000000167558
Erythranthe guttata scaffold_12 5 CH_egut_250 3 3 0.000000031813
Eutrema salsugineum scaffold_3 5 CH_esa_133 3 3 0.00000000869853
Fragaria vesca Fvb4 5 CH_fve_139 4 7 0.0000000000214664
Gossypium hirsutum A04 5 CH_ghi_1112 2 2 0.000400523
Gossypium hirsutum D04 5 CH_ghi_1113 2 2 0.000400523
Gossypium raimondii Chr12 5 CH_gra_502 2 2 0.000160832
Lotus japonicus chr2 5 CH_lja_140 3 4 0.0000000306801
Lonicera japonica GWHAAZE00000005 5 CH_lonja_146 7 50 3.62574e-16
Lactuca sativa Lsat_1_v8_lg_7 5 CH_lsa_87 6 16 4.52431e-16
Medicago truncatula chr6 5 CH_mtr_172 5 9 0.00000000000000269301
Nelumbo nucifera chr8 5 CH_nnu_29 6 10 3.43053e-17
Nicotiana tabacum Nitab4.5_0000053 5 CH_nta_314 2 2 0.000658364
Nicotiana tabacum Nitab4.5_0000413 5 CH_nta_315 2 2 0.000658364
Olea europaea chr11 5 CH_oeu_434 2 2 0.000160137
Punica granatum NC_045134.1 5 CH_pgr_538 2 4 0.00045018
Prunus persica Pp01 5 CH_ppe_737 2 4 0.000447544
Phaseolus vulgaris Chr04 5 CH_pvu_440 2 2 0.0000734727
Quercus lobata 11 5 CH_qlo_316 5 11 0.0000000000000246192
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_965 2 2 0.0000398653
Rhododendron simsii chr01 5 CH_rsi_757 2 3 0.000193586
Salvia bowleyana GWHASIU00000002 5 CH_sbo_650 2 2 0.000272988
Simmondsia chinensis GWHAASQ00000008 5 CH_sci_147 4 33 0.000000378057
Sequoiadendron giganteum chr1 5 CH_sgi_214 7 8 9.63419e-20
Sequoiadendron giganteum chr4 5 CH_sgi_755 4 5 0.00000000315554
Solanum lycopersicum SL4.0ch07 5 CH_sly_576 2 2 0.0000586941
Schrenkiella parvula ch6-2 5 CH_spa_232 2 2 0.000078734
Solanum pennellii Spenn-ch07 5 CH_spe_541 2 2 0.000044479
Trochodendron aralioides group10 5 CH_tar_498 2 2 0.0000600366
Theobroma cacao Chromosome_5 5 CH_tca_611 2 2 0.000219716
Trifolium pratense Tp57577_TGAC_v2_LG2 5 CH_tpr_475 2 2 0.0000756974
Tripterygium wilfordii NC_052235.1 5 CH_twi_394 2 2 0.000167252
Vigna mungo CM024077.1 5 CH_vmu_327 2 2 0.0000646141
Vitis vinifera chr11 5 CH_vvi_80 6 13 9.83141e-17
Actinidia chinensis Lachesis_group25 6 CH_ach_335 2 2 0.000162964
Avicennia marina ScioBoG_52287_HRSCAF_52434 6 CH_ama_36 3 4 0.0000000446052
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 6 CH_arhy_442 3 3 0.0000000268895
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_705 3 11 0.00000443504
Brassica carinata ChrB01 6 CH_bca_1884 2 2 0.00059854
Brassica napus A09 6 CH_bna_1355 2 2 0.000519726
Brassica rapa A09 6 CH_bra_456 2 2 0.000257588
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_138 4 15 0.0000000116114
Camellia sinensis var. sinensis Chr14 6 CH_camsi_1314 2 5 0.000458516
Carpinus fangiana Cfa08 6 CH_cfa_579 2 3 0.000681569
Cardamine hirsuta Chr8 6 CH_chi_762 2 5 0.000691133
Citrullus lanatus CG_Chr06 6 CH_cla_265 2 3 0.000266123
Cucumis melo chr02 6 CH_cme_300 2 2 0.0000667111
Capsella rubella scaffold_6 6 CH_cru_97 4 4 0.00000000000117273
Cucumis sativus L. chr1 6 CH_csa_135 3 3 0.0000000104528
Eucalyptus grandis Chr03 6 CH_egr_308 6 20 0.0000000000000167558
Erythranthe guttata scaffold_12 6 CH_egut_250 3 3 0.000000031813
Eutrema salsugineum scaffold_3 6 CH_esa_133 3 3 0.00000000869853
Fragaria x ananassa Fvb4-4 6 CH_fan_1103 2 3 0.000555093
Fragaria x ananassa Fvb4-3 6 CH_fan_890 2 2 0.000185036
Fragaria vesca Fvb4 6 CH_fve_139 4 7 0.0000000000214664
Gossypium hirsutum A04 6 CH_ghi_1112 2 2 0.000400523
Gossypium hirsutum D04 6 CH_ghi_1113 2 2 0.000400523
Gossypium raimondii Chr12 6 CH_gra_502 2 2 0.000160832
Lotus japonicus chr2 6 CH_lja_140 3 4 0.0000000306801
Lonicera japonica GWHAAZE00000005 6 CH_lonja_146 7 50 3.62574e-16
Lactuca sativa Lsat_1_v8_lg_7 6 CH_lsa_87 6 16 4.52431e-16
Medicago truncatula chr6 6 CH_mtr_172 5 9 0.00000000000000269301
Nelumbo nucifera chr8 6 CH_nnu_29 6 10 3.43053e-17
Nicotiana tabacum Nitab4.5_0000053 6 CH_nta_314 2 2 0.000658364
Nicotiana tabacum Nitab4.5_0000413 6 CH_nta_315 2 2 0.000658364
Olea europaea chr11 6 CH_oeu_434 2 2 0.000160137
Punica granatum NC_045134.1 6 CH_pgr_538 2 4 0.00045018
Prunus persica Pp01 6 CH_ppe_737 2 4 0.000447544
Phaseolus vulgaris Chr04 6 CH_pvu_440 2 2 0.0000734727
Quercus lobata 11 6 CH_qlo_316 5 11 0.0000000000000246192
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_965 2 2 0.0000398653
Rhododendron simsii chr01 6 CH_rsi_757 2 3 0.000193586
Salvia bowleyana GWHASIU00000002 6 CH_sbo_650 2 2 0.000272988
Simmondsia chinensis GWHAASQ00000008 6 CH_sci_147 4 33 0.000000378057
Sequoiadendron giganteum chr1 6 CH_sgi_214 7 8 9.63419e-20
Sequoiadendron giganteum chr4 6 CH_sgi_755 4 5 0.00000000315554
Solanum lycopersicum SL4.0ch07 6 CH_sly_576 2 2 0.0000586941
Schrenkiella parvula ch6-2 6 CH_spa_232 2 2 0.000078734
Solanum pennellii Spenn-ch07 6 CH_spe_541 2 2 0.000044479
Trochodendron aralioides group10 6 CH_tar_498 2 2 0.0000600366
Theobroma cacao Chromosome_5 6 CH_tca_611 2 2 0.000219716
Trifolium pratense Tp57577_TGAC_v2_LG2 6 CH_tpr_475 2 2 0.0000756974
Tripterygium wilfordii NC_052235.1 6 CH_twi_394 2 2 0.000167252
Vigna mungo CM024077.1 6 CH_vmu_327 2 2 0.0000646141
Vitis vinifera chr11 6 CH_vvi_80 6 13 9.83141e-17

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001