Functional clusters

Information

  • Type InterPro
  • Description Carbohydrate-binding, CenC-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB03 5 CH_bca_2133 2 2 0.000961939
Brassica carinata ChrC01 5 CH_bca_522 3 3 0.0000000822522
Brassica oleracea C3 5 CH_bol_228 3 3 0.0000000560911
Brassica rapa A08 5 CH_bra_565 2 2 0.00064397
Cannabis sativa NC_044370.1 5 CH_cansat_72 6 37 0.000000000000458472
Cicer arietinum L. Ca_LG1_v3 5 CH_car_350 2 2 0.000466981
Corylus avellana 7 5 CH_cav_599 2 3 0.00023
Citrus clementina scaffold_8 5 CH_ccl_637 2 2 0.000246093
Corchorus olitorius AWUE01021126.1 5 CH_col_144 2 2 0.000292099
Carica papaya supercontig_106 5 CH_cpa_563 2 2 0.000570396
Carica papaya supercontig_160 5 CH_cpa_564 2 2 0.000570396
Durio zibethinus NW_019167949.1 5 CH_dzi_434 2 2 0.000139047
Eucalyptus grandis Chr09 5 CH_egr_794 3 3 0.000000616601
Gossypium hirsutum A05 5 CH_ghi_1110 2 2 0.000400523
Gossypium hirsutum D05 5 CH_ghi_1111 2 2 0.000400523
Gossypium raimondii Chr09 5 CH_gra_501 2 2 0.000160832
Manihot esculenta Chromosome05 5 CH_mes_286 3 3 0.000000111865
Nicotiana tabacum Nitab4.5_0001614 5 CH_nta_313 2 2 0.000658364
Punica granatum NC_045133.1 5 CH_pgr_556 2 2 0.000450214
Rhododendron simsii chr06 5 CH_rsi_470 3 5 0.000000624551
Salix brachista GWHAAZH00000002 5 CH_sbr_145 4 5 0.00000000013136
Solanum pennellii Spenn-ch01 5 CH_spe_901 2 2 0.00093406
Solanum tuberosum ST4.03ch04 5 CH_stu_856 2 2 0.000512453
Trochodendron aralioides group5 5 CH_tar_272 3 3 0.000000189236
Tripterygium wilfordii NC_052248.1 5 CH_twi_479 2 3 0.000501733
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_582 2 2 0.000278772
Vitis vinifera chr3 5 CH_vvi_362 3 7 0.00000121469
Brassica carinata ChrB03 6 CH_bca_2133 2 2 0.000961939
Brassica carinata ChrC01 6 CH_bca_522 3 3 0.0000000822522
Brassica oleracea C3 6 CH_bol_228 3 3 0.0000000560911
Brassica rapa A08 6 CH_bra_565 2 2 0.00064397
Cannabis sativa NC_044370.1 6 CH_cansat_72 6 37 0.000000000000458472
Cicer arietinum L. Ca_LG1_v3 6 CH_car_350 2 2 0.000466981
Corylus avellana 7 6 CH_cav_599 2 3 0.00023
Citrus clementina scaffold_8 6 CH_ccl_637 2 2 0.000246093
Corchorus olitorius AWUE01021126.1 6 CH_col_144 2 2 0.000292099
Carica papaya supercontig_106 6 CH_cpa_563 2 2 0.000570396
Carica papaya supercontig_160 6 CH_cpa_564 2 2 0.000570396
Durio zibethinus NW_019167949.1 6 CH_dzi_434 2 2 0.000139047
Eucalyptus grandis Chr09 6 CH_egr_794 3 3 0.000000616601
Fragaria x ananassa Fvb2-4 6 CH_fan_498 3 6 0.00000225927
Gossypium hirsutum A05 6 CH_ghi_1110 2 2 0.000400523
Gossypium hirsutum D05 6 CH_ghi_1111 2 2 0.000400523
Gossypium raimondii Chr09 6 CH_gra_501 2 2 0.000160832
Manihot esculenta Chromosome05 6 CH_mes_286 3 3 0.000000111865
Nicotiana tabacum Nitab4.5_0001614 6 CH_nta_313 2 2 0.000658364
Punica granatum NC_045133.1 6 CH_pgr_556 2 2 0.000450214
Rhododendron simsii chr06 6 CH_rsi_470 3 5 0.000000624551
Salix brachista GWHAAZH00000002 6 CH_sbr_145 4 5 0.00000000013136
Solanum pennellii Spenn-ch01 6 CH_spe_901 2 2 0.00093406
Solanum tuberosum ST4.03ch04 6 CH_stu_856 2 2 0.000512453
Trochodendron aralioides group5 6 CH_tar_272 3 3 0.000000189236
Tripterygium wilfordii NC_052248.1 6 CH_twi_479 2 3 0.000501733
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_582 2 2 0.000278772
Vitis vinifera chr3 6 CH_vvi_362 3 7 0.00000121469

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001