Functional clusters

Information

  • Type InterPro
  • Description S1/P1 nuclease

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 5 CH_acertr_741 2 2 0.000211491
Actinidia chinensis Lachesis_group0 5 CH_ach_334 2 2 0.000162964
Arabidopsis lyrata scaffold_7 5 CH_aly_216 3 3 0.0000000653509
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 5 CH_amhyb_92 3 3 0.0000000425145
Aquilegia oxysepala CHR06 5 CH_aox_482 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_1297 2 2 0.000838273
Arabidopsis thaliana Chr4 5 CH_ath_235 3 6 0.00000024621
Brassica carinata Contig959 5 CH_bca_753 3 4 0.000000997894
Brassica napus C03 5 CH_bna_758 3 7 0.00000658187
Brassica oleracea C3 5 CH_bol_245 3 3 0.0000000897457
Brassica oleracea C1 5 CH_bol_890 2 2 0.000915212
Brassica rapa A01 5 CH_bra_564 2 2 0.00064397
Camellia sinensis var. sinensis Chr10 5 CH_camsi_1171 2 4 0.000275116
Cannabis sativa NC_044371.1 5 CH_cansat_202 3 4 0.00000010348
Capsicum annuum PGAv.1.6.scaffold1181 5 CH_can_679 2 2 0.000247831
Corylus avellana 2 5 CH_cav_633 2 2 0.000230008
Chara braunii BFEA01000004 5 CH_cbr_265 2 2 0.000215781
Coffea canephora chr2 5 CH_ccan_623 2 5 0.000425883
Citrus clementina scaffold_2 5 CH_ccl_338 3 5 0.000000403705
Cardamine hirsuta Chr7 5 CH_chi_702 2 2 0.000414723
Corchorus olitorius AWUE01020860.1 5 CH_col_143 2 2 0.000292099
Carica papaya supercontig_27 5 CH_cpa_300 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2947 5 CH_cqu_1037 2 3 0.000852831
Capsella rubella scaffold_7 5 CH_cru_227 3 3 0.000000080191
Daucus carota DCARv2_Chr8 5 CH_dca_227 3 4 0.000000244043
Durio zibethinus NW_019167982.1 5 CH_dzi_533 2 2 0.000463489
Eucalyptus grandis Chr04 5 CH_egr_1176 2 2 0.000175582
Erythranthe guttata scaffold_5 5 CH_egut_314 3 3 0.000000445382
Eutrema salsugineum scaffold_1 5 CH_esa_166 3 3 0.0000000869853
Fragaria vesca Fvb3 5 CH_fve_631 2 2 0.00017673
Gossypium raimondii Chr11 5 CH_gra_665 2 2 0.00080416
Lupinus albus Lalb_Chr09 5 CH_lal_599 2 2 0.000314895
Lotus japonicus chr2 5 CH_lja_597 2 2 0.000715077
Malus domestica Chr05 5 CH_mdo_1300 2 2 0.000568817
Medicago truncatula chr5 5 CH_mtr_978 3 20 0.0000576682
Nelumbo nucifera chr1 5 CH_nnu_502 2 2 0.00028901
Oryza sativa ssp. japonica chr01 5 CH_osa_636 2 3 0.000316874
Punica granatum NC_045131.1 5 CH_pgr_495 2 2 0.000225107
Prunus persica Pp04 5 CH_ppe_683 2 2 0.000223789
Pisum sativum chr6LG2 5 CH_psa_329 5 77 0.00000470239
Papaver somniferum NC_039358.1 5 CH_pso_409 3 3 0.0000000266479
Populus trichocarpa Chr11 5 CH_ptr_609 2 2 0.0001734
Quercus lobata 5 5 CH_qlo_1573 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_1108 2 2 0.000119596
Rhododendron simsii chr05 5 CH_rsi_163 5 8 0.000000000000152935
Salvia bowleyana GWHASIU00000004 5 CH_sbo_649 2 2 0.000272988
Simmondsia chinensis GWHAASQ00000005 5 CH_sci_385 2 2 0.000255428
Sequoiadendron giganteum chr3 5 CH_sgi_1224 3 3 0.000000587373
Sequoiadendron giganteum chr1 5 CH_sgi_1883 3 9 0.0000492888
Sequoiadendron giganteum chr4 5 CH_sgi_656 4 4 0.000000000114461
Solanum lycopersicum SL4.0ch02 5 CH_sly_703 2 2 0.000176082
Solanum pennellii Spenn-ch02 5 CH_spe_641 2 2 0.000133437
Selenicereus undatus Scaffold_33680 5 CH_sun_265 2 2 0.000217992
Trochodendron aralioides group12 5 CH_tar_196 3 3 0.000000021627
Theobroma cacao Chromosome_6 5 CH_tca_609 2 2 0.000219716
Tripterygium wilfordii NC_052240.1 5 CH_twi_145 3 3 0.0000000186494
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_580 2 2 0.000278772
Vitis vinifera chrUn 5 CH_vvi_597 2 2 0.000228189
Acer truncatum chr10 6 CH_acertr_741 2 2 0.000211491
Actinidia chinensis Lachesis_group0 6 CH_ach_334 2 2 0.000162964
Arabidopsis lyrata scaffold_7 6 CH_aly_216 3 3 0.0000000653509
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 6 CH_amhyb_92 3 3 0.0000000425145
Aquilegia oxysepala CHR06 6 CH_aox_482 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_1297 2 2 0.000838273
Arabidopsis thaliana Chr4 6 CH_ath_235 3 6 0.00000024621
Brassica carinata Contig959 6 CH_bca_753 3 4 0.000000997894
Brassica napus C03 6 CH_bna_758 3 7 0.00000658187
Brassica oleracea C3 6 CH_bol_245 3 3 0.0000000897457
Brassica oleracea C1 6 CH_bol_890 2 2 0.000915212
Brassica rapa A01 6 CH_bra_564 2 2 0.00064397
Camellia sinensis var. sinensis Chr10 6 CH_camsi_1171 2 4 0.000275116
Cannabis sativa NC_044371.1 6 CH_cansat_202 3 4 0.00000010348
Capsicum annuum PGAv.1.6.scaffold1181 6 CH_can_679 2 2 0.000247831
Corylus avellana 2 6 CH_cav_633 2 2 0.000230008
Chara braunii BFEA01000004 6 CH_cbr_265 2 2 0.000215781
Coffea canephora chr2 6 CH_ccan_623 2 5 0.000425883
Citrus clementina scaffold_2 6 CH_ccl_338 3 5 0.000000403705
Cardamine hirsuta Chr7 6 CH_chi_702 2 2 0.000414723
Corchorus olitorius AWUE01020860.1 6 CH_col_143 2 2 0.000292099
Carica papaya supercontig_27 6 CH_cpa_300 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2947 6 CH_cqu_1037 2 3 0.000852831
Capsella rubella scaffold_7 6 CH_cru_227 3 3 0.000000080191
Daucus carota DCARv2_Chr8 6 CH_dca_227 3 4 0.000000244043
Durio zibethinus NW_019167982.1 6 CH_dzi_533 2 2 0.000463489
Eucalyptus grandis Chr04 6 CH_egr_1176 2 2 0.000175582
Erythranthe guttata scaffold_5 6 CH_egut_314 3 3 0.000000445382
Eutrema salsugineum scaffold_1 6 CH_esa_166 3 3 0.0000000869853
Fragaria vesca Fvb3 6 CH_fve_631 2 2 0.00017673
Gossypium raimondii Chr11 6 CH_gra_665 2 2 0.00080416
Lupinus albus Lalb_Chr09 6 CH_lal_599 2 2 0.000314895
Lotus japonicus chr2 6 CH_lja_597 2 2 0.000715077
Malus domestica Chr05 6 CH_mdo_1300 2 2 0.000568817
Medicago truncatula chr5 6 CH_mtr_978 3 20 0.0000576682
Nelumbo nucifera chr1 6 CH_nnu_502 2 2 0.00028901
Oryza sativa ssp. japonica chr01 6 CH_osa_636 2 3 0.000316874
Punica granatum NC_045131.1 6 CH_pgr_495 2 2 0.000225107
Prunus persica Pp04 6 CH_ppe_683 2 2 0.000223789
Pisum sativum chr6LG2 6 CH_psa_329 5 77 0.00000470239
Papaver somniferum NC_039358.1 6 CH_pso_409 3 3 0.0000000266479
Populus trichocarpa Chr11 6 CH_ptr_609 2 2 0.0001734
Quercus lobata 5 6 CH_qlo_1573 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_1108 2 2 0.000119596
Rhododendron simsii chr05 6 CH_rsi_163 5 8 0.000000000000152935
Salvia bowleyana GWHASIU00000004 6 CH_sbo_649 2 2 0.000272988
Simmondsia chinensis GWHAASQ00000005 6 CH_sci_385 2 2 0.000255428
Sequoiadendron giganteum chr3 6 CH_sgi_1224 3 3 0.000000587373
Sequoiadendron giganteum chr1 6 CH_sgi_1883 3 9 0.0000492888
Sequoiadendron giganteum chr4 6 CH_sgi_656 4 4 0.000000000114461
Solanum lycopersicum SL4.0ch02 6 CH_sly_703 2 2 0.000176082
Solanum pennellii Spenn-ch02 6 CH_spe_641 2 2 0.000133437
Selenicereus undatus Scaffold_33680 6 CH_sun_265 2 2 0.000217992
Trochodendron aralioides group12 6 CH_tar_196 3 3 0.000000021627
Theobroma cacao Chromosome_6 6 CH_tca_609 2 2 0.000219716
Tripterygium wilfordii NC_052240.1 6 CH_twi_145 3 3 0.0000000186494
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_580 2 2 0.000278772
Vitis vinifera chrUn 6 CH_vvi_597 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001