Functional clusters
Information
- Type InterPro
- Description PA domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC01 | 5 | CH_bca_1746 | 3 | 5 | 0.000391325 |
| Brassica carinata | ChrB04 | 5 | CH_bca_229 | 5 | 6 | 0.000000000122273 |
| Brassica napus | A09 | 5 | CH_bna_977 | 3 | 3 | 0.0000510451 |
| Brassica oleracea | C9 | 5 | CH_bol_234 | 4 | 5 | 0.000000058604 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_360 | 3 | 3 | 0.0000320807 |
| Cicer arietinum L. | Ca_LG3_v3 | 5 | CH_car_245 | 3 | 3 | 0.000120343 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_267 | 5 | 9 | 0.0000000280242 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_680 | 3 | 4 | 0.000398447 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_360 | 3 | 3 | 0.0000174143 |
| Carica papaya | supercontig_29 | 5 | CH_cpa_249 | 3 | 3 | 0.0000274393 |
| Chlamydomonas reinhardtii | chromosome_5 | 5 | CH_cre_90 | 3 | 7 | 0.0000379908 |
| Daucus carota | DCARv2_Chr1 | 5 | CH_dca_580 | 3 | 4 | 0.000345965 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_747 | 4 | 4 | 0.0000002376 |
| Erythranthe guttata | scaffold_5 | 5 | CH_egut_38 | 12 | 14 | 8.29604e-26 |
| Erythranthe guttata | scaffold_5 | 5 | CH_egut_390 | 4 | 5 | 0.00000561609 |
| Erythranthe guttata | scaffold_5 | 5 | CH_egut_679 | 3 | 3 | 0.000454568 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_293 | 4 | 4 | 0.0000000321166 |
| Helianthus annuus | HanXRQChr15 | 5 | CH_han_518 | 4 | 6 | 0.000000504587 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 5 | CH_hma_237 | 3 | 3 | 0.0000246201 |
| Lupinus albus | Lalb_Chr13 | 5 | CH_lal_11 | 10 | 10 | 4.17871e-25 |
| Lotus japonicus | chr2 | 5 | CH_lja_436 | 3 | 3 | 0.000132666 |
| Lotus japonicus | chr2 | 5 | CH_lja_437 | 3 | 3 | 0.000132666 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_324 | 4 | 4 | 0.0000000502819 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_376 | 4 | 5 | 0.000000251201 |
| Medicago truncatula | chr5 | 5 | CH_mtr_156 | 8 | 17 | 8.07161e-16 |
| Petunia axillaris | Peaxi162Scf00102 | 5 | CH_pax_273 | 4 | 5 | 0.00000152766 |
| Petunia axillaris | Peaxi162Scf00302 | 5 | CH_pax_489 | 4 | 11 | 0.0000999733 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_393 | 3 | 3 | 0.000037964 |
| Prunus persica | Pp01 | 5 | CH_ppe_334 | 4 | 4 | 0.0000000919317 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_175 | 5 | 13 | 0.0000000168784 |
| Populus trichocarpa | Chr11 | 5 | CH_ptr_575 | 3 | 3 | 0.000110753 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_576 | 3 | 3 | 0.000110753 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_380 | 4 | 4 | 0.0000000532479 |
| Rhododendron simsii | chr08 | 5 | CH_rsi_643 | 3 | 3 | 0.0000485354 |
| Sechium edule | LG08 | 5 | CH_sed_230 | 4 | 7 | 0.00000312653 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1894 | 3 | 3 | 0.0000615709 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_2200 | 3 | 4 | 0.000246075 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_212 | 5 | 8 | 0.00000000820577 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_447 | 4 | 6 | 0.00000294633 |
| Tripterygium wilfordii | NC_052248.1 | 5 | CH_twi_140 | 6 | 19 | 0.0000000117425 |
| Tripterygium wilfordii | NC_052245.1 | 5 | CH_twi_99 | 5 | 5 | 0.000000000303423 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_375 | 3 | 3 | 0.0000262166 |
| Vitis vinifera | chrUn | 5 | CH_vvi_177 | 5 | 6 | 0.000000000488615 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1746 | 3 | 5 | 0.000391325 |
| Brassica carinata | ChrB04 | 6 | CH_bca_229 | 5 | 6 | 0.000000000122273 |
| Brassica napus | A09 | 6 | CH_bna_977 | 3 | 3 | 0.0000510451 |
| Brassica oleracea | C9 | 6 | CH_bol_234 | 4 | 5 | 0.000000058604 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_360 | 3 | 3 | 0.0000320807 |
| Cicer arietinum L. | Ca_LG3_v3 | 6 | CH_car_245 | 3 | 3 | 0.000120343 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_267 | 5 | 9 | 0.0000000280242 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_680 | 3 | 4 | 0.000398447 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_360 | 3 | 3 | 0.0000174143 |
| Cucumis melo | chr06 | 6 | CH_cme_230 | 4 | 9 | 0.00000402026 |
| Cucumis melo | chr09 | 6 | CH_cme_396 | 3 | 5 | 0.000330617 |
| Carica papaya | supercontig_29 | 6 | CH_cpa_249 | 3 | 3 | 0.0000274393 |
| Chlamydomonas reinhardtii | chromosome_5 | 6 | CH_cre_90 | 3 | 7 | 0.0000379908 |
| Daucus carota | DCARv2_Chr1 | 6 | CH_dca_580 | 3 | 4 | 0.000345965 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_747 | 4 | 4 | 0.0000002376 |
| Erythranthe guttata | scaffold_5 | 6 | CH_egut_38 | 12 | 14 | 8.29604e-26 |
| Erythranthe guttata | scaffold_5 | 6 | CH_egut_390 | 4 | 5 | 0.00000561609 |
| Erythranthe guttata | scaffold_5 | 6 | CH_egut_679 | 3 | 3 | 0.000454568 |
| Fragaria x ananassa | Fvb5-2 | 6 | CH_fan_211 | 5 | 6 | 0.00000000123611 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_212 | 5 | 6 | 0.00000000123611 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_293 | 4 | 4 | 0.0000000321166 |
| Helianthus annuus | HanXRQChr15 | 6 | CH_han_518 | 4 | 6 | 0.000000504587 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 6 | CH_hma_237 | 3 | 3 | 0.0000246201 |
| Lupinus albus | Lalb_Chr13 | 6 | CH_lal_11 | 10 | 10 | 4.17871e-25 |
| Lotus japonicus | chr2 | 6 | CH_lja_436 | 3 | 3 | 0.000132666 |
| Lotus japonicus | chr2 | 6 | CH_lja_437 | 3 | 3 | 0.000132666 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_324 | 4 | 4 | 0.0000000502819 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_376 | 4 | 5 | 0.000000251201 |
| Medicago truncatula | chr5 | 6 | CH_mtr_156 | 8 | 17 | 8.07161e-16 |
| Petunia axillaris | Peaxi162Scf00102 | 6 | CH_pax_273 | 4 | 5 | 0.00000152766 |
| Petunia axillaris | Peaxi162Scf00302 | 6 | CH_pax_489 | 4 | 11 | 0.0000999733 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_393 | 3 | 3 | 0.000037964 |
| Prunus persica | Pp01 | 6 | CH_ppe_334 | 4 | 4 | 0.0000000919317 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_175 | 5 | 13 | 0.0000000168784 |
| Populus trichocarpa | Chr11 | 6 | CH_ptr_575 | 3 | 3 | 0.000110753 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_576 | 3 | 3 | 0.000110753 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_380 | 4 | 4 | 0.0000000532479 |
| Rhododendron simsii | chr08 | 6 | CH_rsi_643 | 3 | 3 | 0.0000485354 |
| Sechium edule | LG08 | 6 | CH_sed_230 | 4 | 7 | 0.00000312653 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1894 | 3 | 3 | 0.0000615709 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_2200 | 3 | 4 | 0.000246075 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_212 | 5 | 8 | 0.00000000820577 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_447 | 4 | 6 | 0.00000294633 |
| Tripterygium wilfordii | NC_052248.1 | 6 | CH_twi_140 | 6 | 19 | 0.0000000117425 |
| Tripterygium wilfordii | NC_052245.1 | 6 | CH_twi_99 | 5 | 5 | 0.000000000303423 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_375 | 3 | 3 | 0.0000262166 |
| Vitis vinifera | chrUn | 6 | CH_vvi_177 | 5 | 6 | 0.000000000488615 |
Available child term results
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |