Functional clusters
Information
- Type InterPro
- Description Dynamin GTPase effector
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 5 | CH_aar_204 | 3 | 4 | 0.00000419412 |
| Camellia sinensis var. sinensis | Chr3 | 5 | CH_camsi_844 | 3 | 5 | 0.000017654 |
| Coffea canephora | chr9 | 5 | CH_ccan_186 | 4 | 72 | 0.000000170269 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 5 | CH_cqu_471 | 4 | 14 | 0.00000232841 |
| Davidia involucrata | GWHABJS00000009 | 5 | CH_din_371 | 4 | 20 | 0.00000553712 |
| Durio zibethinus | NW_019168004.1 | 5 | CH_dzi_327 | 3 | 4 | 0.0000146895 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_97 | 5 | 7 | 0.00000000000989533 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_60 | 12 | 15 | 2.83802e-32 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_608 | 4 | 4 | 0.00000000899248 |
| Eutrema salsugineum | scaffold_8 | 5 | CH_esa_225 | 3 | 3 | 0.00000248778 |
| Gossypium raimondii | Chr13 | 5 | CH_gra_213 | 4 | 5 | 0.0000000138285 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_98 | 6 | 6 | 1.44686e-16 |
| Manihot esculenta | Chromosome09 | 5 | CH_mes_446 | 3 | 4 | 0.0000182495 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_377 | 3 | 5 | 0.0000241397 |
| Physcomitrium patens | Chr18 | 5 | CH_ppa_191 | 3 | 5 | 0.0000866468 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_134 | 4 | 5 | 0.00000000105377 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_632 | 3 | 8 | 0.0000630218 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_134 | 5 | 6 | 0.00000000000259177 |
| Aethionema arabicum | LG-2 | 6 | CH_aar_204 | 3 | 4 | 0.00000419412 |
| Camellia sinensis var. sinensis | Chr3 | 6 | CH_camsi_844 | 3 | 5 | 0.000017654 |
| Coffea canephora | chr9 | 6 | CH_ccan_186 | 4 | 72 | 0.000000170269 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 6 | CH_cqu_471 | 4 | 14 | 0.00000232841 |
| Davidia involucrata | GWHABJS00000009 | 6 | CH_din_371 | 4 | 20 | 0.00000553712 |
| Durio zibethinus | NW_019168004.1 | 6 | CH_dzi_327 | 3 | 4 | 0.0000146895 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_97 | 5 | 7 | 0.00000000000989533 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_60 | 12 | 15 | 2.83802e-32 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_608 | 4 | 4 | 0.00000000899248 |
| Eutrema salsugineum | scaffold_8 | 6 | CH_esa_225 | 3 | 3 | 0.00000248778 |
| Gossypium raimondii | Chr13 | 6 | CH_gra_213 | 4 | 5 | 0.0000000138285 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_98 | 6 | 6 | 1.44686e-16 |
| Manihot esculenta | Chromosome09 | 6 | CH_mes_446 | 3 | 4 | 0.0000182495 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_377 | 3 | 5 | 0.0000241397 |
| Physcomitrium patens | Chr18 | 6 | CH_ppa_191 | 3 | 5 | 0.0000866468 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_134 | 4 | 5 | 0.00000000105377 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_632 | 3 | 8 | 0.0000630218 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_134 | 5 | 6 | 0.00000000000259177 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |