Functional clusters
Information
- Type InterPro
- Description SRA-YDG
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC06 | 5 | CH_bca_1104 | 3 | 4 | 0.0000179399 |
| Brassica carinata | ChrB03 | 5 | CH_bca_950 | 3 | 3 | 0.00000448617 |
| Brassica napus | C02 | 5 | CH_bna_692 | 4 | 13 | 0.00000341708 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 5 | CH_bvu_165 | 4 | 7 | 0.0000000812472 |
| Corylus avellana | 1 | 5 | CH_cav_445 | 3 | 6 | 0.0000387631 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_659 | 3 | 6 | 0.000253424 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1971 | 5 | CH_cqu_308 | 4 | 6 | 0.0000000839393 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1817 | 5 | CH_cqu_309 | 4 | 6 | 0.0000000839393 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3458 | 5 | CH_cqu_544 | 3 | 3 | 0.00000985046 |
| Eutrema salsugineum | scaffold_20 | 5 | CH_esa_158 | 4 | 4 | 0.0000000363085 |
| Eutrema salsugineum | scaffold_7 | 5 | CH_esa_228 | 4 | 8 | 0.00000253316 |
| Eutrema salsugineum | scaffold_3 | 5 | CH_esa_229 | 4 | 8 | 0.00000253316 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_604 | 3 | 8 | 0.000162994 |
| Gossypium hirsutum | A01 | 5 | CH_ghi_1225 | 3 | 9 | 0.000586799 |
| Helianthus annuus | HanXRQChr08 | 5 | CH_han_191 | 5 | 6 | 0.00000000000204156 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_838 | 3 | 8 | 0.000109512 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_527 | 3 | 5 | 0.0000113296 |
| Medicago truncatula | chr7 | 5 | CH_mtr_626 | 4 | 9 | 0.000000459221 |
| Oryza sativa ssp. japonica | chr08 | 5 | CH_osa_431 | 3 | 5 | 0.000023416 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_1423 | 3 | 14 | 0.000706177 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_95 | 6 | 8 | 0.00000000000000219594 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_209 | 4 | 7 | 0.00000000660318 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_80 | 6 | 7 | 1.67158e-16 |
| Tripterygium wilfordii | NC_052251.1 | 5 | CH_twi_286 | 3 | 4 | 0.00000848309 |
| Brassica carinata | ChrC06 | 6 | CH_bca_1104 | 3 | 4 | 0.0000179399 |
| Brassica carinata | ChrB03 | 6 | CH_bca_950 | 3 | 3 | 0.00000448617 |
| Brassica napus | C02 | 6 | CH_bna_692 | 4 | 13 | 0.00000341708 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 6 | CH_bvu_165 | 4 | 7 | 0.0000000812472 |
| Corylus avellana | 1 | 6 | CH_cav_445 | 3 | 6 | 0.0000387631 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_659 | 3 | 6 | 0.000253424 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1971 | 6 | CH_cqu_308 | 4 | 6 | 0.0000000839393 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1817 | 6 | CH_cqu_309 | 4 | 6 | 0.0000000839393 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3458 | 6 | CH_cqu_544 | 3 | 3 | 0.00000985046 |
| Eutrema salsugineum | scaffold_20 | 6 | CH_esa_158 | 4 | 4 | 0.0000000363085 |
| Eutrema salsugineum | scaffold_7 | 6 | CH_esa_228 | 4 | 8 | 0.00000253316 |
| Eutrema salsugineum | scaffold_3 | 6 | CH_esa_229 | 4 | 8 | 0.00000253316 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_604 | 3 | 8 | 0.000162994 |
| Gossypium hirsutum | A01 | 6 | CH_ghi_1225 | 3 | 9 | 0.000586799 |
| Helianthus annuus | HanXRQChr08 | 6 | CH_han_191 | 5 | 6 | 0.00000000000204156 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_838 | 3 | 8 | 0.000109512 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_527 | 3 | 5 | 0.0000113296 |
| Medicago truncatula | chr7 | 6 | CH_mtr_626 | 4 | 9 | 0.000000459221 |
| Oryza sativa ssp. japonica | chr08 | 6 | CH_osa_431 | 3 | 5 | 0.000023416 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_1423 | 3 | 14 | 0.000706177 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_95 | 6 | 8 | 0.00000000000000219594 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_209 | 4 | 7 | 0.00000000660318 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_80 | 6 | 7 | 1.67158e-16 |
| Tripterygium wilfordii | NC_052251.1 | 6 | CH_twi_286 | 3 | 4 | 0.00000848309 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |