Functional clusters

Information

  • Type InterPro
  • Description Expansin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_15 7 18 5.3566e-18
Arabidopsis lyrata scaffold_7 5 CH_aly_172 4 4 0.00000000916755
Avicennia marina ScioBoG_25048_HRSCAF_25167 5 CH_ama_93 3 3 0.0000171737
Arabidopsis thaliana Chr5 5 CH_ath_62 6 12 0.0000000000000709662
Brassica carinata ChrC01 5 CH_bca_1347 3 3 0.0000752169
Camellia sinensis var. sinensis Chr10 5 CH_camsi_1007 3 4 0.000106364
Camellia sinensis var. sinensis Chr7 5 CH_camsi_33 9 9 4.51954e-24
Chara braunii BFEA01000196 5 CH_cbr_308 3 17 0.000442054
Cardamine hirsuta Chr8 5 CH_chi_216 4 4 0.0000000235325
Chenopodium quinoa C_Quinoa_Scaffold_2048 5 CH_cqu_166 5 5 0.0000000000888128
Chenopodium quinoa C_Quinoa_Scaffold_1412 5 CH_cqu_167 5 5 0.0000000000888128
Chenopodium quinoa C_Quinoa_Scaffold_1971 5 CH_cqu_670 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_1817 5 CH_cqu_671 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_3631 5 CH_cqu_672 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_1675 5 CH_cqu_673 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_3489 5 CH_cqu_674 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_1516 5 CH_cqu_978 3 5 0.00070009
Capsella rubella scaffold_7 5 CH_cru_232 4 5 0.000000102834
Davidia involucrata GWHABJS00000015 5 CH_din_484 3 4 0.0000608996
Durio zibethinus NW_019167960.1 5 CH_dzi_558 3 6 0.000587845
Eucalyptus grandis Chr06 5 CH_egr_1099 3 4 0.0000600852
Eutrema salsugineum scaffold_14 5 CH_esa_49 7 10 0.00000000000000287099
Fragaria vesca Fvb6 5 CH_fve_264 4 4 0.0000000145684
Fragaria vesca Fvb6 5 CH_fve_501 3 3 0.0000190219
Helianthus annuus HanXRQChr12 5 CH_han_128 6 6 0.000000000000011822
Lupinus albus Lalb_Chr04 5 CH_lal_54 6 6 0.000000000000040293
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_518 3 3 0.00000911523
Magnolia biondii Chr16 5 CH_mbi_564 5 42 0.00000229662
Malus domestica Chr12 5 CH_mdo_375 5 12 0.000000013282
Manihot esculenta Chromosome09 5 CH_mes_460 3 3 0.0000334699
Nicotiana tabacum Nitab4.5_0001410 5 CH_nta_179 3 4 0.0000490952
Oryza sativa ssp. japonica chr02 5 CH_osa_117 6 13 0.00000000000942651
Oryza sativa ssp. japonica chr03 5 CH_osa_127 6 15 0.0000000000174952
Petunia axillaris Peaxi162Scf00620 5 CH_pax_341 3 3 0.0000150285
Physcomitrium patens Chr14 5 CH_ppa_17 6 14 0.000000000094148
Physcomitrium patens Chr21 5 CH_ppa_198 3 4 0.000147324
Physcomitrium patens Chr18 5 CH_ppa_199 3 4 0.000147324
Physcomitrium patens Chr07 5 CH_ppa_388 3 6 0.000735494
Papaver somniferum NC_039361.1 5 CH_pso_556 4 10 0.000000657092
Papaver somniferum NC_039365.1 5 CH_pso_903 3 5 0.0000751744
Quercus lobata CM012294 5 CH_qlo_1143 3 4 0.0000212636
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_912 3 4 0.0000219243
Rhododendron simsii chr07 5 CH_rsi_150 6 6 0.0000000000000278949
Rhododendron simsii chr09 5 CH_rsi_620 3 3 0.000034081
Rhododendron simsii chr03 5 CH_rsi_621 3 3 0.000034081
Rhododendron simsii chr06 5 CH_rsi_742 4 20 0.000157857
Sequoiadendron giganteum chr1 5 CH_sgi_126 12 19 2.11188e-25
Sequoiadendron giganteum chr3 5 CH_sgi_1887 4 10 0.0000521095
Sequoiadendron giganteum chr9 5 CH_sgi_2162 3 3 0.000162898
Sequoiadendron giganteum chr4 5 CH_sgi_2163 3 3 0.000162898
Sequoiadendron giganteum chr6 5 CH_sgi_319 7 7 8.19998e-16
Sequoiadendron giganteum chr4 5 CH_sgi_457 6 6 0.000000000000561015
Sequoiadendron giganteum chr2 5 CH_sgi_659 6 10 0.000000000117213
Solanum lycopersicum SL4.0ch03 5 CH_sly_127 6 9 0.000000000000302711
Selaginella moellendorffii scaffold_11 5 CH_smo_253 3 7 0.000207874
Solanum pennellii Spenn-ch03 5 CH_spe_478 3 4 0.0000157828
Solanum tuberosum ST4.03ch03 5 CH_stu_536 3 4 0.000027894
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_743 3 7 0.000690103
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_231 4 5 0.000000285622
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_99 5 5 0.0000000000664267
Vanilla planifolia CM028150.1 5 CH_vpl_733 3 10 0.000799374
Zea mays 1 5 CH_zma_304 3 3 0.0000256676
Zea mays 6 5 CH_zma_41 7 13 0.00000000000000747321
Zea mays 1 5 CH_zma_82 5 6 0.0000000000997995
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_15 7 18 5.3566e-18
Arabidopsis lyrata scaffold_7 6 CH_aly_172 4 4 0.00000000916755
Avicennia marina ScioBoG_25048_HRSCAF_25167 6 CH_ama_93 3 3 0.0000171737
Arabidopsis thaliana Chr5 6 CH_ath_62 6 12 0.0000000000000709662
Brassica carinata ChrC01 6 CH_bca_1347 3 3 0.0000752169
Camellia sinensis var. sinensis Chr10 6 CH_camsi_1007 3 4 0.000106364
Camellia sinensis var. sinensis Chr7 6 CH_camsi_33 9 9 4.51954e-24
Chara braunii BFEA01000196 6 CH_cbr_308 3 17 0.000442054
Cardamine hirsuta Chr8 6 CH_chi_216 4 4 0.0000000235325
Chenopodium quinoa C_Quinoa_Scaffold_2048 6 CH_cqu_166 5 5 0.0000000000888128
Chenopodium quinoa C_Quinoa_Scaffold_1412 6 CH_cqu_167 5 5 0.0000000000888128
Chenopodium quinoa C_Quinoa_Scaffold_1971 6 CH_cqu_670 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_1817 6 CH_cqu_671 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_3631 6 CH_cqu_672 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_1675 6 CH_cqu_673 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_3489 6 CH_cqu_674 3 3 0.0000701319
Chenopodium quinoa C_Quinoa_Scaffold_1516 6 CH_cqu_978 3 5 0.00070009
Capsella rubella scaffold_7 6 CH_cru_232 4 5 0.000000102834
Davidia involucrata GWHABJS00000015 6 CH_din_484 3 4 0.0000608996
Durio zibethinus NW_019167960.1 6 CH_dzi_558 3 6 0.000587845
Eucalyptus grandis Chr06 6 CH_egr_1099 3 4 0.0000600852
Eutrema salsugineum scaffold_14 6 CH_esa_49 7 10 0.00000000000000287099
Fragaria x ananassa Fvb6-2 6 CH_fan_1221 3 5 0.000829326
Fragaria vesca Fvb6 6 CH_fve_264 4 4 0.0000000145684
Fragaria vesca Fvb6 6 CH_fve_501 3 3 0.0000190219
Helianthus annuus HanXRQChr12 6 CH_han_128 6 6 0.000000000000011822
Lupinus albus Lalb_Chr04 6 CH_lal_54 6 6 0.000000000000040293
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_518 3 3 0.00000911523
Magnolia biondii Chr16 6 CH_mbi_564 5 42 0.00000229662
Malus domestica Chr12 6 CH_mdo_375 5 12 0.000000013282
Manihot esculenta Chromosome09 6 CH_mes_460 3 3 0.0000334699
Nicotiana tabacum Nitab4.5_0001410 6 CH_nta_179 3 4 0.0000490952
Oryza sativa ssp. japonica chr02 6 CH_osa_117 6 13 0.00000000000942651
Oryza sativa ssp. japonica chr03 6 CH_osa_127 6 15 0.0000000000174952
Petunia axillaris Peaxi162Scf00620 6 CH_pax_341 3 3 0.0000150285
Physcomitrium patens Chr14 6 CH_ppa_17 6 14 0.000000000094148
Physcomitrium patens Chr21 6 CH_ppa_198 3 4 0.000147324
Physcomitrium patens Chr18 6 CH_ppa_199 3 4 0.000147324
Physcomitrium patens Chr07 6 CH_ppa_388 3 6 0.000735494
Papaver somniferum NC_039361.1 6 CH_pso_556 4 10 0.000000657092
Papaver somniferum NC_039365.1 6 CH_pso_903 3 5 0.0000751744
Quercus lobata CM012294 6 CH_qlo_1143 3 4 0.0000212636
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_912 3 4 0.0000219243
Rhododendron simsii chr07 6 CH_rsi_150 6 6 0.0000000000000278949
Rhododendron simsii chr09 6 CH_rsi_620 3 3 0.000034081
Rhododendron simsii chr03 6 CH_rsi_621 3 3 0.000034081
Rhododendron simsii chr06 6 CH_rsi_742 4 20 0.000157857
Sequoiadendron giganteum chr1 6 CH_sgi_126 12 19 2.11188e-25
Sequoiadendron giganteum chr3 6 CH_sgi_1887 4 10 0.0000521095
Sequoiadendron giganteum chr9 6 CH_sgi_2162 3 3 0.000162898
Sequoiadendron giganteum chr4 6 CH_sgi_2163 3 3 0.000162898
Sequoiadendron giganteum chr6 6 CH_sgi_319 7 7 8.19998e-16
Sequoiadendron giganteum chr4 6 CH_sgi_457 6 6 0.000000000000561015
Sequoiadendron giganteum chr2 6 CH_sgi_659 6 10 0.000000000117213
Solanum lycopersicum SL4.0ch03 6 CH_sly_127 6 9 0.000000000000302711
Selaginella moellendorffii scaffold_11 6 CH_smo_253 3 7 0.000207874
Solanum pennellii Spenn-ch03 6 CH_spe_478 3 4 0.0000157828
Solanum tuberosum ST4.03ch03 6 CH_stu_536 3 4 0.000027894
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_743 3 7 0.000690103
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_231 4 5 0.000000285622
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_99 5 5 0.0000000000664267
Vanilla planifolia CM028150.1 6 CH_vpl_733 3 10 0.000799374
Zea mays 1 6 CH_zma_304 3 3 0.0000256676
Zea mays 6 6 CH_zma_41 7 13 0.00000000000000747321
Zea mays 1 6 CH_zma_82 5 6 0.0000000000997995

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001