Functional clusters
Information
- Type InterPro
- Description Expansin
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_15 | 7 | 18 | 5.3566e-18 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_172 | 4 | 4 | 0.00000000916755 |
| Avicennia marina | ScioBoG_25048_HRSCAF_25167 | 5 | CH_ama_93 | 3 | 3 | 0.0000171737 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_62 | 6 | 12 | 0.0000000000000709662 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1347 | 3 | 3 | 0.0000752169 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_1007 | 3 | 4 | 0.000106364 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_33 | 9 | 9 | 4.51954e-24 |
| Chara braunii | BFEA01000196 | 5 | CH_cbr_308 | 3 | 17 | 0.000442054 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_216 | 4 | 4 | 0.0000000235325 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 5 | CH_cqu_166 | 5 | 5 | 0.0000000000888128 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1412 | 5 | CH_cqu_167 | 5 | 5 | 0.0000000000888128 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1971 | 5 | CH_cqu_670 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1817 | 5 | CH_cqu_671 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3631 | 5 | CH_cqu_672 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1675 | 5 | CH_cqu_673 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3489 | 5 | CH_cqu_674 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1516 | 5 | CH_cqu_978 | 3 | 5 | 0.00070009 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_232 | 4 | 5 | 0.000000102834 |
| Davidia involucrata | GWHABJS00000015 | 5 | CH_din_484 | 3 | 4 | 0.0000608996 |
| Durio zibethinus | NW_019167960.1 | 5 | CH_dzi_558 | 3 | 6 | 0.000587845 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1099 | 3 | 4 | 0.0000600852 |
| Eutrema salsugineum | scaffold_14 | 5 | CH_esa_49 | 7 | 10 | 0.00000000000000287099 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_264 | 4 | 4 | 0.0000000145684 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_501 | 3 | 3 | 0.0000190219 |
| Helianthus annuus | HanXRQChr12 | 5 | CH_han_128 | 6 | 6 | 0.000000000000011822 |
| Lupinus albus | Lalb_Chr04 | 5 | CH_lal_54 | 6 | 6 | 0.000000000000040293 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_518 | 3 | 3 | 0.00000911523 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_564 | 5 | 42 | 0.00000229662 |
| Malus domestica | Chr12 | 5 | CH_mdo_375 | 5 | 12 | 0.000000013282 |
| Manihot esculenta | Chromosome09 | 5 | CH_mes_460 | 3 | 3 | 0.0000334699 |
| Nicotiana tabacum | Nitab4.5_0001410 | 5 | CH_nta_179 | 3 | 4 | 0.0000490952 |
| Oryza sativa ssp. japonica | chr02 | 5 | CH_osa_117 | 6 | 13 | 0.00000000000942651 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_127 | 6 | 15 | 0.0000000000174952 |
| Petunia axillaris | Peaxi162Scf00620 | 5 | CH_pax_341 | 3 | 3 | 0.0000150285 |
| Physcomitrium patens | Chr14 | 5 | CH_ppa_17 | 6 | 14 | 0.000000000094148 |
| Physcomitrium patens | Chr21 | 5 | CH_ppa_198 | 3 | 4 | 0.000147324 |
| Physcomitrium patens | Chr18 | 5 | CH_ppa_199 | 3 | 4 | 0.000147324 |
| Physcomitrium patens | Chr07 | 5 | CH_ppa_388 | 3 | 6 | 0.000735494 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_556 | 4 | 10 | 0.000000657092 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_903 | 3 | 5 | 0.0000751744 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1143 | 3 | 4 | 0.0000212636 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_912 | 3 | 4 | 0.0000219243 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_150 | 6 | 6 | 0.0000000000000278949 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_620 | 3 | 3 | 0.000034081 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_621 | 3 | 3 | 0.000034081 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_742 | 4 | 20 | 0.000157857 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_126 | 12 | 19 | 2.11188e-25 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1887 | 4 | 10 | 0.0000521095 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_2162 | 3 | 3 | 0.000162898 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_2163 | 3 | 3 | 0.000162898 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_319 | 7 | 7 | 8.19998e-16 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_457 | 6 | 6 | 0.000000000000561015 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_659 | 6 | 10 | 0.000000000117213 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_127 | 6 | 9 | 0.000000000000302711 |
| Selaginella moellendorffii | scaffold_11 | 5 | CH_smo_253 | 3 | 7 | 0.000207874 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_478 | 3 | 4 | 0.0000157828 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_536 | 3 | 4 | 0.000027894 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_743 | 3 | 7 | 0.000690103 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_231 | 4 | 5 | 0.000000285622 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_99 | 5 | 5 | 0.0000000000664267 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_733 | 3 | 10 | 0.000799374 |
| Zea mays | 1 | 5 | CH_zma_304 | 3 | 3 | 0.0000256676 |
| Zea mays | 6 | 5 | CH_zma_41 | 7 | 13 | 0.00000000000000747321 |
| Zea mays | 1 | 5 | CH_zma_82 | 5 | 6 | 0.0000000000997995 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_15 | 7 | 18 | 5.3566e-18 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_172 | 4 | 4 | 0.00000000916755 |
| Avicennia marina | ScioBoG_25048_HRSCAF_25167 | 6 | CH_ama_93 | 3 | 3 | 0.0000171737 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_62 | 6 | 12 | 0.0000000000000709662 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1347 | 3 | 3 | 0.0000752169 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_1007 | 3 | 4 | 0.000106364 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_33 | 9 | 9 | 4.51954e-24 |
| Chara braunii | BFEA01000196 | 6 | CH_cbr_308 | 3 | 17 | 0.000442054 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_216 | 4 | 4 | 0.0000000235325 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 6 | CH_cqu_166 | 5 | 5 | 0.0000000000888128 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1412 | 6 | CH_cqu_167 | 5 | 5 | 0.0000000000888128 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1971 | 6 | CH_cqu_670 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1817 | 6 | CH_cqu_671 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3631 | 6 | CH_cqu_672 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1675 | 6 | CH_cqu_673 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3489 | 6 | CH_cqu_674 | 3 | 3 | 0.0000701319 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1516 | 6 | CH_cqu_978 | 3 | 5 | 0.00070009 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_232 | 4 | 5 | 0.000000102834 |
| Davidia involucrata | GWHABJS00000015 | 6 | CH_din_484 | 3 | 4 | 0.0000608996 |
| Durio zibethinus | NW_019167960.1 | 6 | CH_dzi_558 | 3 | 6 | 0.000587845 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1099 | 3 | 4 | 0.0000600852 |
| Eutrema salsugineum | scaffold_14 | 6 | CH_esa_49 | 7 | 10 | 0.00000000000000287099 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_1221 | 3 | 5 | 0.000829326 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_264 | 4 | 4 | 0.0000000145684 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_501 | 3 | 3 | 0.0000190219 |
| Helianthus annuus | HanXRQChr12 | 6 | CH_han_128 | 6 | 6 | 0.000000000000011822 |
| Lupinus albus | Lalb_Chr04 | 6 | CH_lal_54 | 6 | 6 | 0.000000000000040293 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_518 | 3 | 3 | 0.00000911523 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_564 | 5 | 42 | 0.00000229662 |
| Malus domestica | Chr12 | 6 | CH_mdo_375 | 5 | 12 | 0.000000013282 |
| Manihot esculenta | Chromosome09 | 6 | CH_mes_460 | 3 | 3 | 0.0000334699 |
| Nicotiana tabacum | Nitab4.5_0001410 | 6 | CH_nta_179 | 3 | 4 | 0.0000490952 |
| Oryza sativa ssp. japonica | chr02 | 6 | CH_osa_117 | 6 | 13 | 0.00000000000942651 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_127 | 6 | 15 | 0.0000000000174952 |
| Petunia axillaris | Peaxi162Scf00620 | 6 | CH_pax_341 | 3 | 3 | 0.0000150285 |
| Physcomitrium patens | Chr14 | 6 | CH_ppa_17 | 6 | 14 | 0.000000000094148 |
| Physcomitrium patens | Chr21 | 6 | CH_ppa_198 | 3 | 4 | 0.000147324 |
| Physcomitrium patens | Chr18 | 6 | CH_ppa_199 | 3 | 4 | 0.000147324 |
| Physcomitrium patens | Chr07 | 6 | CH_ppa_388 | 3 | 6 | 0.000735494 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_556 | 4 | 10 | 0.000000657092 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_903 | 3 | 5 | 0.0000751744 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1143 | 3 | 4 | 0.0000212636 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_912 | 3 | 4 | 0.0000219243 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_150 | 6 | 6 | 0.0000000000000278949 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_620 | 3 | 3 | 0.000034081 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_621 | 3 | 3 | 0.000034081 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_742 | 4 | 20 | 0.000157857 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_126 | 12 | 19 | 2.11188e-25 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1887 | 4 | 10 | 0.0000521095 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_2162 | 3 | 3 | 0.000162898 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_2163 | 3 | 3 | 0.000162898 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_319 | 7 | 7 | 8.19998e-16 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_457 | 6 | 6 | 0.000000000000561015 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_659 | 6 | 10 | 0.000000000117213 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_127 | 6 | 9 | 0.000000000000302711 |
| Selaginella moellendorffii | scaffold_11 | 6 | CH_smo_253 | 3 | 7 | 0.000207874 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_478 | 3 | 4 | 0.0000157828 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_536 | 3 | 4 | 0.000027894 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_743 | 3 | 7 | 0.000690103 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_231 | 4 | 5 | 0.000000285622 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_99 | 5 | 5 | 0.0000000000664267 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_733 | 3 | 10 | 0.000799374 |
| Zea mays | 1 | 6 | CH_zma_304 | 3 | 3 | 0.0000256676 |
| Zea mays | 6 | 6 | CH_zma_41 | 7 | 13 | 0.00000000000000747321 |
| Zea mays | 1 | 6 | CH_zma_82 | 5 | 6 | 0.0000000000997995 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |