Functional clusters
Information
- Type InterPro
- Description IBR domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 5 | CH_acertr_90 | 5 | 6 | 0.00000000000333733 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 5 | CH_arhy_818 | 3 | 3 | 0.0000178062 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_440 | 3 | 5 | 0.000112427 |
| Brassica carinata | ChrC05 | 5 | CH_bca_1966 | 3 | 5 | 0.000652248 |
| Brassica carinata | ChrB01 | 5 | CH_bca_205 | 8 | 55 | 0.0000000000329487 |
| Brassica carinata | ChrC04 | 5 | CH_bca_996 | 4 | 9 | 0.00000709982 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_770 | 3 | 3 | 0.00000638381 |
| Capsicum annuum | PGAv.1.6.scaffold1569 | 5 | CH_can_160 | 5 | 5 | 0.0000000000282062 |
| Capsicum annuum | PGAv.1.6.scaffold170 | 5 | CH_can_186 | 5 | 7 | 0.000000000591385 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_67 | 8 | 9 | 2.20261e-19 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_324 | 3 | 3 | 0.0000048182 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_42 | 9 | 14 | 2.04345e-18 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_482 | 3 | 3 | 0.000113791 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_52 | 6 | 7 | 0.0000000000000625928 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_1293 | 3 | 8 | 0.000381893 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_834 | 4 | 11 | 0.00000118445 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_49 | 10 | 22 | 3.42815e-20 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_47 | 8 | 12 | 1.64507e-18 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_570 | 3 | 4 | 0.0000760415 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_855 | 3 | 4 | 0.0000755451 |
| Lupinus albus | Lalb_Chr23 | 5 | CH_lal_555 | 3 | 6 | 0.000167031 |
| Lotus japonicus | chr6 | 5 | CH_lja_327 | 3 | 3 | 0.0000118123 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_791 | 3 | 10 | 0.000387217 |
| Malus domestica | Chr08 | 5 | CH_mdo_1161 | 3 | 6 | 0.000307578 |
| Malus domestica | Chr09 | 5 | CH_mdo_1162 | 3 | 6 | 0.000307578 |
| Medicago truncatula | chr3 | 5 | CH_mtr_165 | 7 | 10 | 0.00000000000000146238 |
| Medicago truncatula | chr3 | 5 | CH_mtr_889 | 3 | 3 | 0.0000312496 |
| Oryza sativa ssp. japonica | chr09 | 5 | CH_osa_185 | 4 | 4 | 0.00000000171295 |
| Petunia axillaris | Peaxi162Scf00273 | 5 | CH_pax_117 | 5 | 10 | 0.00000000071641 |
| Prunus persica | Pp07 | 5 | CH_ppe_220 | 5 | 8 | 0.000000000201373 |
| Prunus persica | Pp06 | 5 | CH_ppe_632 | 3 | 5 | 0.0000950606 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_487 | 3 | 6 | 0.0000665487 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_714 | 3 | 12 | 0.000730633 |
| Papaver somniferum | NW_020620381.1 | 5 | CH_pso_562 | 4 | 7 | 0.000000714078 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_813 | 3 | 3 | 0.0000302347 |
| Quercus lobata | 1 | 5 | CH_qlo_1116 | 3 | 3 | 0.0000146102 |
| Quercus lobata | CM012294 | 5 | CH_qlo_545 | 5 | 8 | 0.000000000353861 |
| Quercus lobata | 5 | 5 | CH_qlo_564 | 5 | 9 | 0.000000000795756 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_392 | 5 | 9 | 0.000000000773308 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_66 | 11 | 29 | 5.66263e-24 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_580 | 3 | 3 | 0.0000162409 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_581 | 3 | 3 | 0.0000162409 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_471 | 3 | 3 | 0.00000795817 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_506 | 3 | 5 | 0.0000546676 |
| Acer truncatum | chr7 | 6 | CH_acertr_90 | 5 | 6 | 0.00000000000333733 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 6 | CH_arhy_818 | 3 | 3 | 0.0000178062 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_440 | 3 | 5 | 0.000112427 |
| Brassica carinata | ChrC05 | 6 | CH_bca_1966 | 3 | 5 | 0.000652248 |
| Brassica carinata | ChrB01 | 6 | CH_bca_205 | 8 | 55 | 0.0000000000329487 |
| Brassica carinata | ChrC04 | 6 | CH_bca_996 | 4 | 9 | 0.00000709982 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_770 | 3 | 3 | 0.00000638381 |
| Capsicum annuum | PGAv.1.6.scaffold1569 | 6 | CH_can_160 | 5 | 5 | 0.0000000000282062 |
| Capsicum annuum | PGAv.1.6.scaffold170 | 6 | CH_can_186 | 5 | 7 | 0.000000000591385 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_67 | 8 | 9 | 2.20261e-19 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_324 | 3 | 3 | 0.0000048182 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_42 | 9 | 14 | 2.04345e-18 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_482 | 3 | 3 | 0.000113791 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_52 | 6 | 7 | 0.0000000000000625928 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_1293 | 3 | 8 | 0.000381893 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_834 | 4 | 11 | 0.00000118445 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_49 | 10 | 22 | 3.42815e-20 |
| Fragaria x ananassa | Fvb1-4 | 6 | CH_fan_1145 | 3 | 6 | 0.000664844 |
| Fragaria x ananassa | Fvb1-3 | 6 | CH_fan_1146 | 3 | 6 | 0.000664844 |
| Fragaria x ananassa | Fvb1-2 | 6 | CH_fan_466 | 4 | 8 | 0.00000152763 |
| Fragaria x ananassa | Fvb1-2 | 6 | CH_fan_512 | 4 | 9 | 0.00000274829 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_855 | 3 | 4 | 0.000133102 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_47 | 8 | 12 | 1.64507e-18 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_570 | 3 | 4 | 0.0000760415 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_855 | 3 | 4 | 0.0000755451 |
| Lupinus albus | Lalb_Chr23 | 6 | CH_lal_555 | 3 | 6 | 0.000167031 |
| Lotus japonicus | chr6 | 6 | CH_lja_327 | 3 | 3 | 0.0000118123 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_791 | 3 | 10 | 0.000387217 |
| Malus domestica | Chr08 | 6 | CH_mdo_1161 | 3 | 6 | 0.000307578 |
| Malus domestica | Chr09 | 6 | CH_mdo_1162 | 3 | 6 | 0.000307578 |
| Medicago truncatula | chr3 | 6 | CH_mtr_165 | 7 | 10 | 0.00000000000000146238 |
| Medicago truncatula | chr3 | 6 | CH_mtr_889 | 3 | 3 | 0.0000312496 |
| Oryza sativa ssp. japonica | chr09 | 6 | CH_osa_185 | 4 | 4 | 0.00000000171295 |
| Petunia axillaris | Peaxi162Scf00273 | 6 | CH_pax_117 | 5 | 10 | 0.00000000071641 |
| Prunus persica | Pp07 | 6 | CH_ppe_220 | 5 | 8 | 0.000000000201373 |
| Prunus persica | Pp06 | 6 | CH_ppe_632 | 3 | 5 | 0.0000950606 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_487 | 3 | 6 | 0.0000665487 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_714 | 3 | 12 | 0.000730633 |
| Papaver somniferum | NW_020620381.1 | 6 | CH_pso_562 | 4 | 7 | 0.000000714078 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_813 | 3 | 3 | 0.0000302347 |
| Quercus lobata | 1 | 6 | CH_qlo_1116 | 3 | 3 | 0.0000146102 |
| Quercus lobata | CM012294 | 6 | CH_qlo_545 | 5 | 8 | 0.000000000353861 |
| Quercus lobata | 5 | 6 | CH_qlo_564 | 5 | 9 | 0.000000000795756 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_392 | 5 | 9 | 0.000000000773308 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_66 | 11 | 29 | 5.66263e-24 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_580 | 3 | 3 | 0.0000162409 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_581 | 3 | 3 | 0.0000162409 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_471 | 3 | 3 | 0.00000795817 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_506 | 3 | 5 | 0.0000546676 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |