Functional clusters
Information
- Type InterPro
- Description Zinc finger, A20-type
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_168 | 4 | 5 | 0.000000002601 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 5 | CH_amhyb_40 | 4 | 4 | 0.0000000000268422 |
| Brassica carinata | ChrC01 | 5 | CH_bca_989 | 3 | 3 | 0.0000067721 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 5 | CH_bvu_393 | 3 | 9 | 0.000189648 |
| Capsicum annuum | PGAv.1.6.scaffold222 | 5 | CH_can_615 | 4 | 14 | 0.00013761 |
| Capsicum annuum | PGAv.1.6.scaffold1357 | 5 | CH_can_72 | 8 | 9 | 4.57832e-18 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_676 | 2 | 2 | 0.000637775 |
| Hydrangea macrophylla | Hma1.2p1_0084F.1 | 5 | CH_hma_77 | 4 | 6 | 0.000000018124 |
| Nelumbo nucifera | chr2 | 5 | CH_nnu_234 | 3 | 3 | 0.000000574262 |
| Nicotiana tabacum | Nitab4.5_0000072 | 5 | CH_nta_41 | 4 | 4 | 0.000000000277482 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_405 | 3 | 5 | 0.0000119603 |
| Petunia axillaris | Peaxi162Scf00192 | 5 | CH_pax_101 | 4 | 4 | 0.000000000219424 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_436 | 4 | 9 | 0.0000000458889 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_843 | 3 | 16 | 0.000293159 |
| Vanilla planifolia | CM028159.1 | 5 | CH_vpl_199 | 4 | 15 | 0.00000117729 |
| Acer truncatum | chr1 | 6 | CH_acertr_168 | 4 | 5 | 0.000000002601 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 6 | CH_amhyb_40 | 4 | 4 | 0.0000000000268422 |
| Brassica carinata | ChrC01 | 6 | CH_bca_989 | 3 | 3 | 0.0000067721 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 6 | CH_bvu_393 | 3 | 9 | 0.000189648 |
| Capsicum annuum | PGAv.1.6.scaffold222 | 6 | CH_can_615 | 4 | 14 | 0.00013761 |
| Capsicum annuum | PGAv.1.6.scaffold1357 | 6 | CH_can_72 | 8 | 9 | 4.57832e-18 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_676 | 2 | 2 | 0.000637775 |
| Hydrangea macrophylla | Hma1.2p1_0084F.1 | 6 | CH_hma_77 | 4 | 6 | 0.000000018124 |
| Nelumbo nucifera | chr2 | 6 | CH_nnu_234 | 3 | 3 | 0.000000574262 |
| Nicotiana tabacum | Nitab4.5_0000072 | 6 | CH_nta_41 | 4 | 4 | 0.000000000277482 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_405 | 3 | 5 | 0.0000119603 |
| Petunia axillaris | Peaxi162Scf00192 | 6 | CH_pax_101 | 4 | 4 | 0.000000000219424 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_436 | 4 | 9 | 0.0000000458889 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_843 | 3 | 16 | 0.000293159 |
| Vanilla planifolia | CM028159.1 | 6 | CH_vpl_199 | 4 | 15 | 0.00000117729 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |