Functional clusters
Information
- Type InterPro
- Description Peptide methionine sulphoxide reductase MsrA
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 5 | CH_acertr_92 | 5 | 11 | 0.0000000000047901 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_674 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_514 | 2 | 2 | 0.000286492 |
| Brassica carinata | ChrB01 | 5 | CH_bca_270 | 4 | 4 | 0.000000000438109 |
| Brassica carinata | ChrB01 | 5 | CH_bca_271 | 4 | 4 | 0.000000000438109 |
| Brassica carinata | ChrC06 | 5 | CH_bca_41 | 9 | 51 | 5.83373e-19 |
| Brassica napus | A03 | 5 | CH_bna_111 | 5 | 5 | 0.0000000000000473034 |
| Brassica napus | C03 | 5 | CH_bna_50 | 6 | 6 | 8.78062e-18 |
| Brassica oleracea | C3 | 5 | CH_bol_99 | 4 | 4 | 0.0000000000220015 |
| Brassica rapa | A03 | 5 | CH_bra_32 | 5 | 5 | 0.000000000000032794 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_775 | 2 | 2 | 0.000691204 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_243 | 3 | 3 | 0.000000160382 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_903 | 3 | 10 | 0.00000431431 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_509 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_709 | 2 | 2 | 0.000353461 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_892 | 2 | 3 | 0.000925157 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_634 | 2 | 2 | 0.000316874 |
| Petunia axillaris | Peaxi162Scf00304 | 5 | CH_pax_620 | 2 | 2 | 0.000422134 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_1026 | 2 | 2 | 0.000967961 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_2030 | 2 | 2 | 0.000146145 |
| Selaginella moellendorffii | scaffold_51 | 5 | CH_smo_131 | 3 | 4 | 0.00000292876 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_361 | 2 | 2 | 0.00078734 |
| Acer truncatum | chr9 | 6 | CH_acertr_92 | 5 | 11 | 0.0000000000047901 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_674 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_514 | 2 | 2 | 0.000286492 |
| Brassica carinata | ChrB01 | 6 | CH_bca_270 | 4 | 4 | 0.000000000438109 |
| Brassica carinata | ChrB01 | 6 | CH_bca_271 | 4 | 4 | 0.000000000438109 |
| Brassica carinata | ChrC06 | 6 | CH_bca_41 | 9 | 51 | 5.83373e-19 |
| Brassica napus | A03 | 6 | CH_bna_111 | 5 | 5 | 0.0000000000000473034 |
| Brassica napus | C03 | 6 | CH_bna_50 | 6 | 6 | 8.78062e-18 |
| Brassica oleracea | C3 | 6 | CH_bol_99 | 4 | 4 | 0.0000000000220015 |
| Brassica rapa | A03 | 6 | CH_bra_32 | 5 | 5 | 0.000000000000032794 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_775 | 2 | 2 | 0.000691204 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_243 | 3 | 3 | 0.000000160382 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_903 | 3 | 10 | 0.00000431431 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_509 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_709 | 2 | 2 | 0.000353461 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_892 | 2 | 3 | 0.000925157 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_634 | 2 | 2 | 0.000316874 |
| Petunia axillaris | Peaxi162Scf00304 | 6 | CH_pax_620 | 2 | 2 | 0.000422134 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_1026 | 2 | 2 | 0.000967961 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_2030 | 2 | 2 | 0.000146145 |
| Selaginella moellendorffii | scaffold_51 | 6 | CH_smo_131 | 3 | 4 | 0.00000292876 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_361 | 2 | 2 | 0.00078734 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |