Functional clusters
Information
- Type InterPro
- Description Transcription factor, K-box
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_328 | 4 | 5 | 0.000000346792 |
| Acer truncatum | chr5 | 5 | CH_acertr_942 | 3 | 5 | 0.000578172 |
| Avicennia marina | ScioBoG_19743_HRSCAF_19834 | 5 | CH_ama_107 | 4 | 9 | 0.0000759607 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 5 | CH_amhyb_188 | 3 | 3 | 0.0000188233 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_166 | 4 | 5 | 0.00000000580254 |
| Brassica carinata | ChrC04 | 5 | CH_bca_1044 | 4 | 6 | 0.00000962293 |
| Brassica carinata | ChrC02 | 5 | CH_bca_301 | 5 | 5 | 0.00000000102433 |
| Brassica napus | C02 | 5 | CH_bna_979 | 4 | 8 | 0.0000516155 |
| Brassica oleracea | C4 | 5 | CH_bol_587 | 4 | 11 | 0.0000916608 |
| Brassica rapa | A02 | 5 | CH_bra_446 | 3 | 3 | 0.000254024 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_494 | 6 | 38 | 0.0000000867486 |
| Cannabis sativa | NC_044379.1 | 5 | CH_cansat_426 | 3 | 4 | 0.000154692 |
| Cannabis sativa | NC_044379.1 | 5 | CH_cansat_496 | 3 | 5 | 0.000386423 |
| Corylus avellana | 9 | 5 | CH_cav_221 | 5 | 13 | 0.0000000562899 |
| Coffea canephora | chr9 | 5 | CH_ccan_282 | 4 | 76 | 0.00000972208 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_458 | 5 | 32 | 0.0000250326 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_385 | 3 | 3 | 0.000046943 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_451 | 3 | 3 | 0.0000428855 |
| Carya illinoinensis | Chr04 | 5 | CH_cil_351 | 5 | 13 | 0.000000241779 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_570 | 3 | 4 | 0.000259926 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_708 | 3 | 5 | 0.000649203 |
| Durio zibethinus | NW_019167938.1 | 5 | CH_dzi_460 | 3 | 3 | 0.000192184 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1298 | 3 | 4 | 0.000427561 |
| Erythranthe guttata | scaffold_11 | 5 | CH_egut_61 | 9 | 13 | 5.65677e-19 |
| Lupinus albus | Lalb_Chr08 | 5 | CH_lal_650 | 3 | 4 | 0.000364882 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_589 | 3 | 3 | 0.00000365834 |
| Malus domestica | Chr06 | 5 | CH_mdo_1149 | 3 | 4 | 0.00026602 |
| Medicago truncatula | chr8 | 5 | CH_mtr_1024 | 3 | 4 | 0.000100013 |
| Petunia axillaris | Peaxi162Scf00021 | 5 | CH_pax_666 | 3 | 5 | 0.000485121 |
| Petunia axillaris | Peaxi162Scf00023 | 5 | CH_pax_667 | 3 | 5 | 0.000485121 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_462 | 3 | 3 | 0.000186653 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_52 | 9 | 20 | 8.66844e-16 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_41 | 9 | 24 | 4.47946e-17 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_213 | 8 | 56 | 0.00000000000738245 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_991 | 3 | 4 | 0.000139285 |
| Papaver somniferum | NW_020631041.1 | 5 | CH_pso_992 | 3 | 4 | 0.000139285 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_191 | 5 | 5 | 0.000000000264779 |
| Populus trichocarpa | Chr07 | 5 | CH_ptr_582 | 3 | 3 | 0.000124303 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_802 | 4 | 11 | 0.0000041269 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_436 | 3 | 3 | 0.0000462807 |
| Salix brachista | GWHAAZH00000007 | 5 | CH_sbr_623 | 3 | 5 | 0.000462034 |
| Simmondsia chinensis | GWHAASQ00000008 | 5 | CH_sci_148 | 4 | 5 | 0.000000378508 |
| Simmondsia chinensis | GWHAASQ00000018 | 5 | CH_sci_484 | 3 | 5 | 0.000592118 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1554 | 4 | 28 | 0.0000341317 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_959 | 5 | 23 | 0.0000000219091 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_634 | 3 | 3 | 0.0000637738 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_215 | 3 | 3 | 0.0000608614 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_519 | 3 | 3 | 0.0000340685 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_527 | 3 | 3 | 0.0000214924 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_502 | 3 | 5 | 0.0000481481 |
| Acer truncatum | chr1 | 6 | CH_acertr_328 | 4 | 5 | 0.000000346792 |
| Acer truncatum | chr5 | 6 | CH_acertr_942 | 3 | 5 | 0.000578172 |
| Avicennia marina | ScioBoG_19743_HRSCAF_19834 | 6 | CH_ama_107 | 4 | 9 | 0.0000759607 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 6 | CH_amhyb_188 | 3 | 3 | 0.0000188233 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_166 | 4 | 5 | 0.00000000580254 |
| Brassica carinata | ChrC04 | 6 | CH_bca_1044 | 4 | 6 | 0.00000962293 |
| Brassica carinata | ChrC02 | 6 | CH_bca_301 | 5 | 5 | 0.00000000102433 |
| Brassica napus | C02 | 6 | CH_bna_979 | 4 | 8 | 0.0000516155 |
| Brassica oleracea | C4 | 6 | CH_bol_587 | 4 | 11 | 0.0000916608 |
| Brassica rapa | A02 | 6 | CH_bra_446 | 3 | 3 | 0.000254024 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_494 | 6 | 38 | 0.0000000867486 |
| Cannabis sativa | NC_044379.1 | 6 | CH_cansat_426 | 3 | 4 | 0.000154692 |
| Cannabis sativa | NC_044379.1 | 6 | CH_cansat_496 | 3 | 5 | 0.000386423 |
| Corylus avellana | 9 | 6 | CH_cav_221 | 5 | 13 | 0.0000000562899 |
| Coffea canephora | chr9 | 6 | CH_ccan_282 | 4 | 76 | 0.00000972208 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_458 | 5 | 32 | 0.0000250326 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_385 | 3 | 3 | 0.000046943 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_451 | 3 | 3 | 0.0000428855 |
| Carya illinoinensis | Chr04 | 6 | CH_cil_351 | 5 | 13 | 0.000000241779 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_570 | 3 | 4 | 0.000259926 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_708 | 3 | 5 | 0.000649203 |
| Durio zibethinus | NW_019167938.1 | 6 | CH_dzi_460 | 3 | 3 | 0.000192184 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1298 | 3 | 4 | 0.000427561 |
| Erythranthe guttata | scaffold_11 | 6 | CH_egut_61 | 9 | 13 | 5.65677e-19 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_1219 | 3 | 4 | 0.00082301 |
| Lupinus albus | Lalb_Chr08 | 6 | CH_lal_650 | 3 | 4 | 0.000364882 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_589 | 3 | 3 | 0.00000365834 |
| Malus domestica | Chr06 | 6 | CH_mdo_1149 | 3 | 4 | 0.00026602 |
| Medicago truncatula | chr8 | 6 | CH_mtr_1024 | 3 | 4 | 0.000100013 |
| Petunia axillaris | Peaxi162Scf00021 | 6 | CH_pax_666 | 3 | 5 | 0.000485121 |
| Petunia axillaris | Peaxi162Scf00023 | 6 | CH_pax_667 | 3 | 5 | 0.000485121 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_462 | 3 | 3 | 0.000186653 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_52 | 9 | 20 | 8.66844e-16 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_41 | 9 | 24 | 4.47946e-17 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_213 | 8 | 56 | 0.00000000000738245 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_991 | 3 | 4 | 0.000139285 |
| Papaver somniferum | NW_020631041.1 | 6 | CH_pso_992 | 3 | 4 | 0.000139285 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_191 | 5 | 5 | 0.000000000264779 |
| Populus trichocarpa | Chr07 | 6 | CH_ptr_582 | 3 | 3 | 0.000124303 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_802 | 4 | 11 | 0.0000041269 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_436 | 3 | 3 | 0.0000462807 |
| Salix brachista | GWHAAZH00000007 | 6 | CH_sbr_623 | 3 | 5 | 0.000462034 |
| Simmondsia chinensis | GWHAASQ00000008 | 6 | CH_sci_148 | 4 | 5 | 0.000000378508 |
| Simmondsia chinensis | GWHAASQ00000018 | 6 | CH_sci_484 | 3 | 5 | 0.000592118 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1554 | 4 | 28 | 0.0000341317 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_959 | 5 | 23 | 0.0000000219091 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_634 | 3 | 3 | 0.0000637738 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_215 | 3 | 3 | 0.0000608614 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_519 | 3 | 3 | 0.0000340685 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_527 | 3 | 3 | 0.0000214924 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_502 | 3 | 5 | 0.0000481481 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |