Functional clusters

Information

  • Type InterPro
  • Description Ornithine decarboxylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 5 CH_aag_354 2 5 0.000802472
Acer truncatum chr13 5 CH_acertr_542 2 2 0.000070497
Camellia sinensis var. sinensis Chr4 5 CH_camsi_1193 2 2 0.000275128
Citrullus lanatus CG_Chr08 5 CH_cla_194 2 2 0.0000887115
Davidia involucrata GWHABJS00000002 5 CH_din_446 2 2 0.0000500125
Durio zibethinus NW_019168004.1 5 CH_dzi_602 2 3 0.000834235
Fragaria vesca Fvb4 5 CH_fve_272 3 3 0.0000000208231
Gossypium hirsutum A11 5 CH_ghi_935 2 2 0.000160209
Gossypium hirsutum D11 5 CH_ghi_936 2 2 0.000160209
Gossypium raimondii Chr07 5 CH_gra_415 2 2 0.0000536107
Hydrangea macrophylla Hma1.2p1_0023F.1 5 CH_hma_177 3 4 0.00000074035
Medicago truncatula chr3 5 CH_mtr_1031 2 3 0.000123256
Nelumbo nucifera chr5 5 CH_nnu_547 2 2 0.000481684
Prunus persica Pp08 5 CH_ppe_321 4 34 0.0000000576936
Phaseolus vulgaris Chr09 5 CH_pvu_425 2 2 0.0000734727
Quercus lobata CM012294 5 CH_qlo_1208 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_442 4 11 0.00000000438822
Rhododendron simsii chr06 5 CH_rsi_658 2 2 0.0000645307
Sechium edule LG03 5 CH_sed_313 2 2 0.0000713419
Solanum lycopersicum SL4.0ch03 5 CH_sly_684 2 2 0.000176082
Solanum pennellii Spenn-ch03 5 CH_spe_32 6 6 2.74255e-20
Solanum tuberosum ST4.03ch03 5 CH_stu_357 3 5 0.000000157555
Trochodendron aralioides group6 5 CH_tar_751 2 2 0.00036022
Theobroma cacao Chromosome_5 5 CH_tca_741 2 2 0.000732386
Theobroma cacao Chromosome_8 5 CH_tca_742 2 2 0.000732386
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_578 2 2 0.000227092
Tripterygium wilfordii NC_052242.1 5 CH_twi_144 3 3 0.0000000186494
Vitis vinifera chr11 5 CH_vvi_581 2 2 0.000228189
Anthoceros agrestis Sc2ySwM_340 6 CH_aag_354 2 5 0.000802472
Acer truncatum chr13 6 CH_acertr_542 2 2 0.000070497
Camellia sinensis var. sinensis Chr4 6 CH_camsi_1193 2 2 0.000275128
Citrullus lanatus CG_Chr08 6 CH_cla_194 2 2 0.0000887115
Davidia involucrata GWHABJS00000002 6 CH_din_446 2 2 0.0000500125
Durio zibethinus NW_019168004.1 6 CH_dzi_602 2 3 0.000834235
Fragaria x ananassa Fvb4-3 6 CH_fan_291 3 4 0.0000000410852
Fragaria vesca Fvb4 6 CH_fve_272 3 3 0.0000000208231
Gossypium hirsutum A11 6 CH_ghi_935 2 2 0.000160209
Gossypium hirsutum D11 6 CH_ghi_936 2 2 0.000160209
Gossypium raimondii Chr07 6 CH_gra_415 2 2 0.0000536107
Hydrangea macrophylla Hma1.2p1_0023F.1 6 CH_hma_177 3 4 0.00000074035
Medicago truncatula chr3 6 CH_mtr_1031 2 3 0.000123256
Nelumbo nucifera chr5 6 CH_nnu_547 2 2 0.000481684
Prunus persica Pp08 6 CH_ppe_321 4 34 0.0000000576936
Phaseolus vulgaris Chr09 6 CH_pvu_425 2 2 0.0000734727
Quercus lobata CM012294 6 CH_qlo_1208 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_442 4 11 0.00000000438822
Rhododendron simsii chr06 6 CH_rsi_658 2 2 0.0000645307
Sechium edule LG03 6 CH_sed_313 2 2 0.0000713419
Solanum lycopersicum SL4.0ch03 6 CH_sly_684 2 2 0.000176082
Solanum pennellii Spenn-ch03 6 CH_spe_32 6 6 2.74255e-20
Solanum tuberosum ST4.03ch03 6 CH_stu_357 3 5 0.000000157555
Trochodendron aralioides group6 6 CH_tar_751 2 2 0.00036022
Theobroma cacao Chromosome_5 6 CH_tca_741 2 2 0.000732386
Theobroma cacao Chromosome_8 6 CH_tca_742 2 2 0.000732386
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_578 2 2 0.000227092
Tripterygium wilfordii NC_052242.1 6 CH_twi_144 3 3 0.0000000186494
Vitis vinifera chr11 6 CH_vvi_581 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001