Functional clusters
Information
- Type InterPro
- Description Cytochrome P450, E-class, group IV
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_419 | 3 | 5 | 0.0000632707 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_420 | 3 | 5 | 0.0000632707 |
| Brassica napus | C01 | 5 | CH_bna_605 | 5 | 40 | 0.00000122584 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 5 | CH_bvu_78 | 6 | 18 | 0.0000000000129547 |
| Capsicum annuum | PGAv.1.6.scaffold322 | 5 | CH_can_494 | 3 | 3 | 0.0000335369 |
| Carya illinoinensis | Chr08 | 5 | CH_cil_388 | 3 | 3 | 0.000000691558 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1759 | 5 | CH_cqu_290 | 4 | 4 | 0.0000000433251 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3670 | 5 | CH_cqu_349 | 4 | 5 | 0.000000216456 |
| Chlamydomonas reinhardtii | chromosome_10 | 5 | CH_cre_19 | 5 | 20 | 0.00000000108666 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_997 | 3 | 3 | 0.0000254862 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_458 | 3 | 5 | 0.00000624462 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_271 | 3 | 3 | 0.00000283999 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_317 | 3 | 4 | 0.0000113566 |
| Petunia axillaris | Peaxi162Scf00016 | 5 | CH_pax_291 | 3 | 3 | 0.00000337844 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_138 | 5 | 5 | 0.00000000000170371 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_628 | 4 | 12 | 0.000000287351 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_419 | 3 | 4 | 0.0000101324 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_114 | 5 | 5 | 0.00000000000502713 |
| Salix brachista | GWHAAZH00000005 | 5 | CH_sbr_260 | 4 | 6 | 0.000000119528 |
| Schrenkiella parvula | ch7-4 | 5 | CH_spa_172 | 4 | 17 | 0.00000473358 |
| Solanum tuberosum | ST4.03ch08 | 5 | CH_stu_624 | 3 | 4 | 0.0000515934 |
| Selenicereus undatus | Scaffold_33675 | 5 | CH_sun_314 | 2 | 2 | 0.000435983 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_419 | 3 | 5 | 0.0000632707 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_420 | 3 | 5 | 0.0000632707 |
| Brassica napus | C01 | 6 | CH_bna_605 | 5 | 40 | 0.00000122584 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 6 | CH_bvu_78 | 6 | 18 | 0.0000000000129547 |
| Capsicum annuum | PGAv.1.6.scaffold322 | 6 | CH_can_494 | 3 | 3 | 0.0000335369 |
| Carya illinoinensis | Chr08 | 6 | CH_cil_388 | 3 | 3 | 0.000000691558 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1759 | 6 | CH_cqu_290 | 4 | 4 | 0.0000000433251 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3670 | 6 | CH_cqu_349 | 4 | 5 | 0.000000216456 |
| Chlamydomonas reinhardtii | chromosome_10 | 6 | CH_cre_19 | 5 | 20 | 0.00000000108666 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_997 | 3 | 3 | 0.0000254862 |
| Fragaria x ananassa | Fvb2-3 | 6 | CH_fan_1262 | 3 | 8 | 0.000839918 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_458 | 3 | 5 | 0.00000624462 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_271 | 3 | 3 | 0.00000283999 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_317 | 3 | 4 | 0.0000113566 |
| Petunia axillaris | Peaxi162Scf00016 | 6 | CH_pax_291 | 3 | 3 | 0.00000337844 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_138 | 5 | 5 | 0.00000000000170371 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_628 | 4 | 12 | 0.000000287351 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_419 | 3 | 4 | 0.0000101324 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_114 | 5 | 5 | 0.00000000000502713 |
| Salix brachista | GWHAAZH00000005 | 6 | CH_sbr_260 | 4 | 6 | 0.000000119528 |
| Schrenkiella parvula | ch7-4 | 6 | CH_spa_172 | 4 | 17 | 0.00000473358 |
| Solanum tuberosum | ST4.03ch08 | 6 | CH_stu_624 | 3 | 4 | 0.0000515934 |
| Selenicereus undatus | Scaffold_33675 | 6 | CH_sun_314 | 2 | 2 | 0.000435983 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |