Functional clusters
Information
- Type InterPro
- Description Pyrrolo-quinoline quinone repeat
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_69 | 4 | 4 | 0.0000000000541685 |
| Cannabis sativa | NC_044379.1 | 5 | CH_cansat_193 | 4 | 14 | 0.0000000810441 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_405 | 2 | 2 | 0.000778301 |
| Corylus avellana | 5 | 5 | CH_cav_410 | 3 | 7 | 0.00001727 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_597 | 3 | 3 | 0.00000164699 |
| Glycine max | Gm18 | 5 | CH_gma_64 | 5 | 5 | 8.7178e-16 |
| Lotus japonicus | chr1 | 5 | CH_lja_193 | 3 | 3 | 0.000000153406 |
| Medicago truncatula | chr7 | 5 | CH_mtr_344 | 4 | 7 | 0.00000000025485 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_222 | 3 | 3 | 0.000000168917 |
| Prunus persica | Pp03 | 5 | CH_ppe_191 | 4 | 4 | 0.0000000000435902 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_234 | 3 | 3 | 0.0000000809765 |
| Quercus lobata | CM012294 | 5 | CH_qlo_479 | 5 | 16 | 0.0000000000292967 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_166 | 4 | 4 | 0.00000000000988997 |
| Selaginella moellendorffii | scaffold_3 | 5 | CH_smo_178 | 3 | 6 | 0.0000219537 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_320 | 3 | 3 | 0.000000160923 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_34 | 5 | CH_tpr_755 | 2 | 2 | 0.000756974 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_271 | 3 | 3 | 0.00000108804 |
| Vigna mungo | CM024070.1 | 5 | CH_vmu_510 | 2 | 2 | 0.000387685 |
| Vitis vinifera | chr14 | 5 | CH_vvi_119 | 5 | 7 | 0.000000000000664202 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_69 | 4 | 4 | 0.0000000000541685 |
| Cannabis sativa | NC_044379.1 | 6 | CH_cansat_193 | 4 | 14 | 0.0000000810441 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_405 | 2 | 2 | 0.000778301 |
| Corylus avellana | 5 | 6 | CH_cav_410 | 3 | 7 | 0.00001727 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_597 | 3 | 3 | 0.00000164699 |
| Glycine max | Gm18 | 6 | CH_gma_64 | 5 | 5 | 8.7178e-16 |
| Lotus japonicus | chr1 | 6 | CH_lja_193 | 3 | 3 | 0.000000153406 |
| Medicago truncatula | chr7 | 6 | CH_mtr_344 | 4 | 7 | 0.00000000025485 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_222 | 3 | 3 | 0.000000168917 |
| Prunus persica | Pp03 | 6 | CH_ppe_191 | 4 | 4 | 0.0000000000435902 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_234 | 3 | 3 | 0.0000000809765 |
| Quercus lobata | CM012294 | 6 | CH_qlo_479 | 5 | 16 | 0.0000000000292967 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_166 | 4 | 4 | 0.00000000000988997 |
| Selaginella moellendorffii | scaffold_3 | 6 | CH_smo_178 | 3 | 6 | 0.0000219537 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_320 | 3 | 3 | 0.000000160923 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_34 | 6 | CH_tpr_755 | 2 | 2 | 0.000756974 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_271 | 3 | 3 | 0.00000108804 |
| Vigna mungo | CM024070.1 | 6 | CH_vmu_510 | 2 | 2 | 0.000387685 |
| Vitis vinifera | chr14 | 6 | CH_vvi_119 | 5 | 7 | 0.000000000000664202 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |