Functional clusters

Information

  • Type InterPro
  • Description Serine-tRNA ligase, type1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group11 5 CH_ach_593 2 2 0.000814819
Arabidopsis lyrata scaffold_8 5 CH_aly_717 2 2 0.000990066
Camellia sinensis var. sinensis Chr4 5 CH_camsi_369 4 11 0.00000000667764
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_704 3 40 0.000297791
Lonicera japonica GWHAAZE00000004 5 CH_lonja_1147 2 2 0.000598874
Magnolia biondii Chr04 5 CH_mbi_683 3 22 0.000021777
Papaver somniferum NC_039358.1 5 CH_pso_1196 2 2 0.000630822
Sequoiadendron giganteum chr4 5 CH_sgi_2247 2 2 0.000292291
Solanum tuberosum ST4.03ch04 5 CH_stu_907 2 2 0.000768679
Solanum tuberosum ST4.03ch05 5 CH_stu_908 2 2 0.000768679
Utricularia gibba unitig_46 5 CH_ugi_314 2 2 0.000492287
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_408 3 17 0.0000879363
Actinidia chinensis Lachesis_group11 6 CH_ach_593 2 2 0.000814819
Arabidopsis lyrata scaffold_8 6 CH_aly_717 2 2 0.000990066
Camellia sinensis var. sinensis Chr4 6 CH_camsi_369 4 11 0.00000000667764
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_704 3 40 0.000297791
Lonicera japonica GWHAAZE00000004 6 CH_lonja_1147 2 2 0.000598874
Magnolia biondii Chr04 6 CH_mbi_683 3 22 0.000021777
Papaver somniferum NC_039358.1 6 CH_pso_1196 2 2 0.000630822
Sequoiadendron giganteum chr4 6 CH_sgi_2247 2 2 0.000292291
Solanum tuberosum ST4.03ch04 6 CH_stu_907 2 2 0.000768679
Solanum tuberosum ST4.03ch05 6 CH_stu_908 2 2 0.000768679
Utricularia gibba unitig_46 6 CH_ugi_314 2 2 0.000492287
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_408 3 17 0.0000879363

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001