Functional clusters
Information
- Type InterPro
- Description Glycoside hydrolase, family 27
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-3 | 5 | CH_aar_384 | 2 | 2 | 0.000547395 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_597 | 2 | 2 | 0.000396027 |
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_200 | 3 | 4 | 0.00000135053 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 5 | CH_arhy_853 | 3 | 7 | 0.0000263348 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_464 | 2 | 2 | 0.000171895 |
| Coffea canephora | chr11 | 5 | CH_ccan_404 | 2 | 3 | 0.0000638836 |
| Citrus clementina | scaffold_4 | 5 | CH_ccl_705 | 2 | 2 | 0.000492187 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_126 | 4 | 4 | 0.000000000014862 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_451 | 2 | 2 | 0.000500856 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_454 | 2 | 2 | 0.000456899 |
| Lupinus albus | Lalb_Chr04 | 5 | CH_lal_21 | 7 | 7 | 5.65004e-21 |
| Magnolia biondii | Chr06 | 5 | CH_mbi_88 | 7 | 17 | 3.90058e-16 |
| Medicago truncatula | chr8 | 5 | CH_mtr_324 | 5 | 12 | 0.00000000010459 |
| Nelumbo nucifera | chr4 | 5 | CH_nnu_277 | 3 | 5 | 0.00000292274 |
| Nicotiana tabacum | Nitab4.5_0000129 | 5 | CH_nta_256 | 2 | 2 | 0.000329182 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_131 | 4 | 4 | 0.00000000026619 |
| Quercus lobata | 8 | 5 | CH_qlo_684 | 4 | 5 | 0.0000000150954 |
| Quercus lobata | 3 | 5 | CH_qlo_92 | 9 | 10 | 3.5609e-25 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_791 | 2 | 2 | 0.000955457 |
| Sechium edule | LG07 | 5 | CH_sed_499 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_173 | 9 | 20 | 6.96211e-22 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_324 | 2 | 2 | 0.000472404 |
| Tarenaya hassleriana | NW_010966092.1 | 5 | CH_tha_337 | 2 | 2 | 0.00069847 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_284 | 3 | 3 | 0.000001891 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_285 | 3 | 3 | 0.000001891 |
| Vitis vinifera | chr10 | 5 | CH_vvi_340 | 3 | 4 | 0.00000069421 |
| Aethionema arabicum | LG-3 | 6 | CH_aar_384 | 2 | 2 | 0.000547395 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_597 | 2 | 2 | 0.000396027 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_200 | 3 | 4 | 0.00000135053 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 6 | CH_arhy_853 | 3 | 7 | 0.0000263348 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_464 | 2 | 2 | 0.000171895 |
| Coffea canephora | chr11 | 6 | CH_ccan_404 | 2 | 3 | 0.0000638836 |
| Citrus clementina | scaffold_4 | 6 | CH_ccl_705 | 2 | 2 | 0.000492187 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_126 | 4 | 4 | 0.000000000014862 |
| Cucumis melo | chr10 | 6 | CH_cme_412 | 2 | 2 | 0.000400267 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_451 | 2 | 2 | 0.000500856 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_454 | 2 | 2 | 0.000456899 |
| Lupinus albus | Lalb_Chr04 | 6 | CH_lal_21 | 7 | 7 | 5.65004e-21 |
| Magnolia biondii | Chr06 | 6 | CH_mbi_88 | 7 | 17 | 3.90058e-16 |
| Medicago truncatula | chr8 | 6 | CH_mtr_324 | 5 | 12 | 0.00000000010459 |
| Nelumbo nucifera | chr4 | 6 | CH_nnu_277 | 3 | 5 | 0.00000292274 |
| Nicotiana tabacum | Nitab4.5_0000129 | 6 | CH_nta_256 | 2 | 2 | 0.000329182 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_131 | 4 | 4 | 0.00000000026619 |
| Quercus lobata | 8 | 6 | CH_qlo_684 | 4 | 5 | 0.0000000150954 |
| Quercus lobata | 3 | 6 | CH_qlo_92 | 9 | 10 | 3.5609e-25 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_791 | 2 | 2 | 0.000955457 |
| Sechium edule | LG07 | 6 | CH_sed_499 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_173 | 9 | 20 | 6.96211e-22 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_324 | 2 | 2 | 0.000472404 |
| Tarenaya hassleriana | NW_010966092.1 | 6 | CH_tha_337 | 2 | 2 | 0.00069847 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_284 | 3 | 3 | 0.000001891 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_285 | 3 | 3 | 0.000001891 |
| Vitis vinifera | chr10 | 6 | CH_vvi_340 | 3 | 4 | 0.00000069421 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |