Functional clusters
Information
- Type InterPro
- Description Nucleosome assembly protein (NAP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica napus | C06 | 5 | CH_bna_432 | 4 | 9 | 0.0000000759847 |
| Camellia sinensis var. sinensis | Chr15 | 5 | CH_camsi_645 | 3 | 5 | 0.00000110372 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_810 | 2 | 2 | 0.000673083 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_146 | 5 | 6 | 0.0000000000356375 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_594 | 3 | 5 | 0.000135204 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_640 | 3 | 5 | 0.0000101147 |
| Medicago truncatula | chr2 | 5 | CH_mtr_776 | 3 | 5 | 0.0000041769 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_934 | 3 | 7 | 0.000108087 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_230 | 4 | 6 | 0.00000000286672 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_546 | 4 | 7 | 0.0000000588527 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_896 | 3 | 4 | 0.0000168822 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_420 | 3 | 7 | 0.0000249969 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_400 | 5 | CH_tpr_114 | 4 | 4 | 0.000000000429464 |
| Tripterygium wilfordii | NC_052235.1 | 5 | CH_twi_522 | 2 | 2 | 0.00083626 |
| Brassica napus | C06 | 6 | CH_bna_432 | 4 | 9 | 0.0000000759847 |
| Camellia sinensis var. sinensis | Chr15 | 6 | CH_camsi_645 | 3 | 5 | 0.00000110372 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_810 | 2 | 2 | 0.000673083 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_656 | 3 | 3 | 0.0000150274 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_867 | 3 | 5 | 0.000150158 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_146 | 5 | 6 | 0.0000000000356375 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_594 | 3 | 5 | 0.000135204 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_640 | 3 | 5 | 0.0000101147 |
| Medicago truncatula | chr2 | 6 | CH_mtr_776 | 3 | 5 | 0.0000041769 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_934 | 3 | 7 | 0.000108087 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_230 | 4 | 6 | 0.00000000286672 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_546 | 4 | 7 | 0.0000000588527 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_896 | 3 | 4 | 0.0000168822 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_420 | 3 | 7 | 0.0000249969 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_400 | 6 | CH_tpr_114 | 4 | 4 | 0.000000000429464 |
| Tripterygium wilfordii | NC_052235.1 | 6 | CH_twi_522 | 2 | 2 | 0.00083626 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |