Functional clusters

Information

  • Type InterPro
  • Description Ankyrin repeat

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 5 CH_acertr_125 8 17 0.000000000125379
Acer truncatum chr10 5 CH_acertr_162 6 7 0.00000000187374
Actinidia chinensis Lachesis_group9 5 CH_ach_292 4 5 0.0000804646
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 5 CH_amhyb_351 4 6 0.000384693
Arabidopsis thaliana Chr5 5 CH_ath_307 5 20 0.00000531359
Amborella trichopoda AmTr_v1.0_scaffold00056 5 CH_atr_326 4 6 0.0000172234
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_104 7 9 0.000000000460178
Beta vulgaris Chr6_EL10_PGA_scaffold0 5 CH_bvu_108 12 69 0.000000000836071
Beta vulgaris Chr7_EL10_PGA_scaffold5 5 CH_bvu_144 8 22 0.0000000244894
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_322 4 4 0.0000470742
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_86 11 39 0.0000000000300735
Camellia sinensis var. sinensis Chr9 5 CH_camsi_1443 6 40 0.000699129
Capsicum annuum PGAv.1.6.scaffold449 5 CH_can_22 18 32 5.80213e-29
Capsicum annuum PGAv.1.6.scaffold126 5 CH_can_55 13 21 9.72901e-21
Corylus avellana 9 5 CH_cav_191 7 10 0.00000000929594
Corylus avellana 4 5 CH_cav_5 30 44 3.2317e-48
Citrus clementina scaffold_3 5 CH_ccl_39 16 28 1.86102e-23
Carya illinoinensis Chr01 5 CH_cil_206 10 33 0.000000000110401
Chenopodium quinoa C_Quinoa_Scaffold_1000 5 CH_cqu_274 6 7 0.0000000227189
Chenopodium quinoa C_Quinoa_Scaffold_1677 5 CH_cqu_375 8 28 0.000000374372
Chenopodium quinoa C_Quinoa_Scaffold_2646 5 CH_cqu_682 4 4 0.0000777233
Chenopodium quinoa C_Quinoa_Scaffold_2716 5 CH_cqu_683 4 4 0.0000777233
Chlamydomonas reinhardtii chromosome_8 5 CH_cre_58 5 6 0.00000240598
Daucus carota DCARv2_Chr3 5 CH_dca_248 7 26 0.000000583321
Davidia involucrata GWHABJS00000001 5 CH_din_398 5 7 0.0000127689
Durio zibethinus NW_019167904.1 5 CH_dzi_244 5 6 0.000000791775
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_409 5 9 0.00000488437
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_410 5 9 0.00000488437
Eucalyptus grandis Chr11 5 CH_egr_145 14 18 1.14961e-21
Eucalyptus grandis Chr04 5 CH_egr_23 29 51 2.32718e-42
Eucalyptus grandis Chr11 5 CH_egr_284 10 12 0.00000000000000502208
Eucalyptus grandis Chr03 5 CH_egr_360 10 16 0.000000000000590749
Gossypium hirsutum A05 5 CH_ghi_293 7 9 0.000000000214737
Gossypium hirsutum D05 5 CH_ghi_669 5 7 0.00000503893
Glycine max Gm06 5 CH_gma_181 6 6 0.000000000253504
Gossypium raimondii Chr09 5 CH_gra_195 6 6 0.00000000207576
Gossypium raimondii Chr04 5 CH_gra_98 9 11 0.0000000000000251188
Lonicera japonica GWHAAZE00000001 5 CH_lonja_495 7 16 0.000000530146
Lonicera japonica GWHAAZE00000003 5 CH_lonja_658 6 14 0.0000186521
Magnolia biondii Chr07 5 CH_mbi_493 7 39 0.000000687818
Malus domestica Chr15 5 CH_mdo_703 4 4 0.00000756134
Manihot esculenta Chromosome10 5 CH_mes_205 8 18 0.000000000672278
Olea europaea scaffold272 5 CH_oeu_172 5 7 0.000000424495
Oryza sativa ssp. japonica chr11 5 CH_osa_353 5 10 0.00000288577
Oryza sativa ssp. japonica chr03 5 CH_osa_65 8 8 3.24949e-16
Prunus persica Pp03 5 CH_ppe_316 7 16 0.0000000480987
Prunus persica Pp07 5 CH_ppe_537 4 4 0.00002662
Pisum sativum chr2LG1 5 CH_psa_48 11 30 3.51075e-16
Populus trichocarpa Chr19 5 CH_ptr_63 12 17 6.48829e-20
Phaseolus vulgaris Chr09 5 CH_pvu_247 6 11 0.000000130176
Quercus lobata CM012294 5 CH_qlo_1347 4 4 0.0000894096
Quercus lobata 10 5 CH_qlo_895 7 17 0.00000052448
Rhododendron simsii chr03 5 CH_rsi_246 8 13 0.000000000101305
Salvia bowleyana GWHASIU00000008 5 CH_sbo_86 10 14 1.02683e-17
Simmondsia chinensis GWHAASQ00000016 5 CH_sci_35 12 36 0.00000000000000873429
Simmondsia chinensis GWHAASQ00000016 5 CH_sci_67 8 16 0.000000000159428
Sequoiadendron giganteum chr2 5 CH_sgi_1917 8 58 0.0000791139
Sequoiadendron giganteum chr6 5 CH_sgi_634 8 13 0.0000000000668192
Selenicereus undatus Scaffold_33680 5 CH_sun_44 6 8 0.00000000303404
Theobroma cacao Chromosome_10 5 CH_tca_5 30 35 1.74246e-57
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_416 4 5 0.0000215551
Utricularia gibba unitig_8 5 CH_ugi_217 4 8 0.000111708
Vigna mungo CM024075.1 5 CH_vmu_123 7 19 0.0000000100956
Acer truncatum chr1 6 CH_acertr_125 8 17 0.000000000125379
Acer truncatum chr10 6 CH_acertr_162 6 7 0.00000000187374
Actinidia chinensis Lachesis_group9 6 CH_ach_292 4 5 0.0000804646
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 6 CH_amhyb_351 4 6 0.000384693
Arabidopsis thaliana Chr5 6 CH_ath_307 5 20 0.00000531359
Amborella trichopoda AmTr_v1.0_scaffold00056 6 CH_atr_326 4 6 0.0000172234
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_104 7 9 0.000000000460178
Beta vulgaris Chr6_EL10_PGA_scaffold0 6 CH_bvu_108 12 69 0.000000000836071
Beta vulgaris Chr7_EL10_PGA_scaffold5 6 CH_bvu_144 8 22 0.0000000244894
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_322 4 4 0.0000470742
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_86 11 39 0.0000000000300735
Camellia sinensis var. sinensis Chr9 6 CH_camsi_1443 6 40 0.000699129
Capsicum annuum PGAv.1.6.scaffold449 6 CH_can_22 18 32 5.80213e-29
Capsicum annuum PGAv.1.6.scaffold126 6 CH_can_55 13 21 9.72901e-21
Corylus avellana 9 6 CH_cav_191 7 10 0.00000000929594
Corylus avellana 4 6 CH_cav_5 30 44 3.2317e-48
Citrus clementina scaffold_3 6 CH_ccl_39 16 28 1.86102e-23
Carya illinoinensis Chr01 6 CH_cil_206 10 33 0.000000000110401
Chenopodium quinoa C_Quinoa_Scaffold_1000 6 CH_cqu_274 6 7 0.0000000227189
Chenopodium quinoa C_Quinoa_Scaffold_1677 6 CH_cqu_375 8 28 0.000000374372
Chenopodium quinoa C_Quinoa_Scaffold_2646 6 CH_cqu_682 4 4 0.0000777233
Chenopodium quinoa C_Quinoa_Scaffold_2716 6 CH_cqu_683 4 4 0.0000777233
Chlamydomonas reinhardtii chromosome_8 6 CH_cre_58 5 6 0.00000240598
Daucus carota DCARv2_Chr3 6 CH_dca_248 7 26 0.000000583321
Davidia involucrata GWHABJS00000001 6 CH_din_398 5 7 0.0000127689
Durio zibethinus NW_019167904.1 6 CH_dzi_244 5 6 0.000000791775
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_409 5 9 0.00000488437
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_410 5 9 0.00000488437
Eucalyptus grandis Chr11 6 CH_egr_145 14 18 1.14961e-21
Eucalyptus grandis Chr04 6 CH_egr_23 29 51 2.32718e-42
Eucalyptus grandis Chr11 6 CH_egr_284 10 12 0.00000000000000502208
Eucalyptus grandis Chr03 6 CH_egr_360 10 16 0.000000000000590749
Gossypium hirsutum A05 6 CH_ghi_293 7 9 0.000000000214737
Gossypium hirsutum D05 6 CH_ghi_669 5 7 0.00000503893
Glycine max Gm06 6 CH_gma_181 6 6 0.000000000253504
Gossypium raimondii Chr09 6 CH_gra_195 6 6 0.00000000207576
Gossypium raimondii Chr04 6 CH_gra_98 9 11 0.0000000000000251188
Lonicera japonica GWHAAZE00000001 6 CH_lonja_495 7 16 0.000000530146
Lonicera japonica GWHAAZE00000003 6 CH_lonja_658 6 14 0.0000186521
Magnolia biondii Chr07 6 CH_mbi_493 7 39 0.000000687818
Malus domestica Chr15 6 CH_mdo_703 4 4 0.00000756134
Manihot esculenta Chromosome10 6 CH_mes_205 8 18 0.000000000672278
Olea europaea scaffold272 6 CH_oeu_172 5 7 0.000000424495
Oryza sativa ssp. japonica chr11 6 CH_osa_353 5 10 0.00000288577
Oryza sativa ssp. japonica chr03 6 CH_osa_65 8 8 3.24949e-16
Prunus persica Pp03 6 CH_ppe_316 7 16 0.0000000480987
Prunus persica Pp07 6 CH_ppe_537 4 4 0.00002662
Pisum sativum chr2LG1 6 CH_psa_48 11 30 3.51075e-16
Populus trichocarpa Chr19 6 CH_ptr_63 12 17 6.48829e-20
Phaseolus vulgaris Chr09 6 CH_pvu_247 6 11 0.000000130176
Quercus lobata CM012294 6 CH_qlo_1347 4 4 0.0000894096
Quercus lobata 10 6 CH_qlo_895 7 17 0.00000052448
Rhododendron simsii chr03 6 CH_rsi_246 8 13 0.000000000101305
Salvia bowleyana GWHASIU00000008 6 CH_sbo_86 10 14 1.02683e-17
Simmondsia chinensis GWHAASQ00000016 6 CH_sci_35 12 36 0.00000000000000873429
Simmondsia chinensis GWHAASQ00000016 6 CH_sci_67 8 16 0.000000000159428
Sequoiadendron giganteum chr2 6 CH_sgi_1917 8 58 0.0000791139
Sequoiadendron giganteum chr6 6 CH_sgi_634 8 13 0.0000000000668192
Selenicereus undatus Scaffold_33680 6 CH_sun_44 6 8 0.00000000303404
Theobroma cacao Chromosome_10 6 CH_tca_5 30 35 1.74246e-57
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_416 4 5 0.0000215551
Utricularia gibba unitig_8 6 CH_ugi_217 4 8 0.000111708
Vigna mungo CM024075.1 6 CH_vmu_123 7 19 0.0000000100956

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001