Functional clusters

Information

  • Type InterPro
  • Description EF-hand domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-9 5 CH_aar_313 5 14 0.000253588
Arabidopsis lyrata scaffold_6 5 CH_aly_460 4 5 0.0000780577
Avicennia marina ScioBoG_102837_HRSCAF_103074 5 CH_ama_71 5 5 0.0000022993
Aquilegia oxysepala CHR05 5 CH_aox_89 6 7 0.000000000790512
Arabidopsis thaliana Chr4 5 CH_ath_345 5 18 0.0000183212
Amborella trichopoda AmTr_v1.0_scaffold00126 5 CH_atr_538 3 3 0.000413502
Camellia sinensis var. sinensis Chr9 5 CH_camsi_421 7 16 0.0000000191368
Camellia sinensis var. sinensis Chr13 5 CH_camsi_613 6 13 0.000000647311
Camellia sinensis var. sinensis Chr4 5 CH_camsi_744 5 8 0.00000477482
Cannabis sativa NC_044372.1 5 CH_cansat_24 13 23 1.32973e-21
Capsicum annuum PGAv.1.6.scaffold371 5 CH_can_140 7 7 0.00000000000223798
Cicer arietinum L. Ca_LG7_v3 5 CH_car_414 4 8 0.000828878
Corylus avellana 1 5 CH_cav_444 6 27 0.0000371386
Coffea canephora chr10 5 CH_ccan_619 4 59 0.000417097
Citrus clementina scaffold_1 5 CH_ccl_32 15 23 8.1697e-25
Citrus clementina scaffold_5 5 CH_ccl_456 4 4 0.0000225802
Carpinus fangiana Cfa07 5 CH_cfa_28 12 12 4.86709e-25
Carya illinoinensis Chr16 5 CH_cil_416 5 6 0.00000140016
Cucumis sativus L. chr2 5 CH_csa_33 11 14 4.27378e-19
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_503 4 5 0.0000392605
Eucalyptus grandis Chr02 5 CH_egr_750 5 6 0.000000281037
Eucalyptus grandis Chr08 5 CH_egr_954 4 4 0.0000112312
Erythranthe guttata scaffold_14 5 CH_egut_187 6 6 0.000000000582274
Fragaria vesca Fvb2 5 CH_fve_323 5 6 0.000000137393
Gossypium hirsutum D06 5 CH_ghi_113 10 10 2.74809e-18
Gossypium hirsutum A06 5 CH_ghi_251 7 7 0.0000000000151459
Gossypium hirsutum D02 5 CH_ghi_526 5 5 0.00000046708
Gossypium raimondii Chr05 5 CH_gra_268 5 5 0.000000260094
Lonicera japonica GWHAAZE00000001 5 CH_lonja_971 4 7 0.000231018
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_737 4 6 0.000256619
Manihot esculenta Chromosome18 5 CH_mes_115 8 8 0.0000000000000377808
Manihot esculenta Chromosome04 5 CH_mes_353 5 6 0.00000125141
Manihot esculenta Chromosome13 5 CH_mes_469 4 4 0.0000367023
Manihot esculenta Chromosome05 5 CH_mes_90 9 9 2.11137e-16
Marchantia polymorpha scaffold_42 5 CH_mpo_62 5 6 0.0000000397382
Medicago truncatula chr1 5 CH_mtr_239 8 12 0.000000000000591692
Medicago truncatula chr3 5 CH_mtr_440 6 9 0.00000000830697
Medicago truncatula chr5 5 CH_mtr_898 4 5 0.000040078
Medicago truncatula chr2 5 CH_mtr_899 4 5 0.000040078
Nicotiana tabacum Nitab4.5_0000205 5 CH_nta_343 4 9 0.000858512
Nicotiana tabacum Nitab4.5_0000686 5 CH_nta_70 6 10 0.0000000259517
Olea europaea chr22 5 CH_oeu_578 4 7 0.000415732
Oryza sativa ssp. japonica chr09 5 CH_osa_423 5 12 0.0000195606
Papaver somniferum NC_039362.1 5 CH_pso_1284 3 3 0.00098498
Populus trichocarpa Chr14 5 CH_ptr_293 6 8 0.0000000363157
Populus trichocarpa Chr19 5 CH_ptr_95 12 27 6.65665e-16
Quercus lobata CM012294 5 CH_qlo_1498 4 6 0.000157755
Quercus lobata CM012294 5 CH_qlo_46 17 21 2.51687e-33
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_1278 5 23 0.000349059
Rhododendron simsii chr07 5 CH_rsi_116 9 9 1.12404e-16
Rhododendron simsii chr10 5 CH_rsi_609 4 4 0.0000270777
Salvia bowleyana GWHASIU00000005 5 CH_sbo_434 4 5 0.0000165153
Salix brachista GWHAAZH00000014 5 CH_sbr_166 7 10 0.000000000924512
Sechium edule LG10 5 CH_sed_22 13 18 5.49284e-21
Sechium edule LG13 5 CH_sed_302 4 4 0.00004818
Sechium edule LG11 5 CH_sed_32 10 11 3.17508e-17
Sequoiadendron giganteum chr1 5 CH_sgi_2373 3 3 0.000418209
Sequoiadendron giganteum chr2 5 CH_sgi_2374 3 3 0.000418209
Solanum pennellii Spenn-ch04 5 CH_spe_243 5 5 0.0000000299157
Solanum tuberosum ST4.03ch04 5 CH_stu_307 5 5 0.0000000266851
Solanum tuberosum ST4.03ch11 5 CH_stu_479 4 4 0.00000733371
Trochodendron aralioides group5 5 CH_tar_265 5 5 0.000000122234
Trochodendron aralioides group1 5 CH_tar_371 5 7 0.0000025451
Theobroma cacao Chromosome_4 5 CH_tca_760 5 20 0.00074239
Vanilla planifolia CM028158.1 5 CH_vpl_230 8 43 0.00000220012
Vitis vinifera chr1 5 CH_vvi_102 8 9 0.0000000000000135766
Zea mays 1 5 CH_zma_123 9 40 0.0000000106046
Aethionema arabicum LG-9 6 CH_aar_313 5 14 0.000253588
Arabidopsis lyrata scaffold_6 6 CH_aly_460 4 5 0.0000780577
Avicennia marina ScioBoG_102837_HRSCAF_103074 6 CH_ama_71 5 5 0.0000022993
Aquilegia oxysepala CHR05 6 CH_aox_89 6 7 0.000000000790512
Arabidopsis thaliana Chr4 6 CH_ath_345 5 18 0.0000183212
Amborella trichopoda AmTr_v1.0_scaffold00126 6 CH_atr_538 3 3 0.000413502
Camellia sinensis var. sinensis Chr9 6 CH_camsi_421 7 16 0.0000000191368
Camellia sinensis var. sinensis Chr13 6 CH_camsi_613 6 13 0.000000647311
Camellia sinensis var. sinensis Chr4 6 CH_camsi_744 5 8 0.00000477482
Cannabis sativa NC_044372.1 6 CH_cansat_24 13 23 1.32973e-21
Capsicum annuum PGAv.1.6.scaffold371 6 CH_can_140 7 7 0.00000000000223798
Cicer arietinum L. Ca_LG7_v3 6 CH_car_414 4 8 0.000828878
Corylus avellana 1 6 CH_cav_444 6 27 0.0000371386
Coffea canephora chr10 6 CH_ccan_619 4 59 0.000417097
Citrus clementina scaffold_1 6 CH_ccl_32 15 23 8.1697e-25
Citrus clementina scaffold_5 6 CH_ccl_456 4 4 0.0000225802
Carpinus fangiana Cfa07 6 CH_cfa_28 12 12 4.86709e-25
Carya illinoinensis Chr16 6 CH_cil_416 5 6 0.00000140016
Cucumis melo chr03 6 CH_cme_38 10 14 2.52686e-17
Cucumis sativus L. chr2 6 CH_csa_33 11 14 4.27378e-19
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_503 4 5 0.0000392605
Eucalyptus grandis Chr02 6 CH_egr_750 5 6 0.000000281037
Eucalyptus grandis Chr08 6 CH_egr_954 4 4 0.0000112312
Erythranthe guttata scaffold_14 6 CH_egut_187 6 6 0.000000000582274
Fragaria vesca Fvb2 6 CH_fve_323 5 6 0.000000137393
Gossypium hirsutum D06 6 CH_ghi_113 10 10 2.74809e-18
Gossypium hirsutum A06 6 CH_ghi_251 7 7 0.0000000000151459
Gossypium hirsutum D02 6 CH_ghi_526 5 5 0.00000046708
Gossypium raimondii Chr05 6 CH_gra_268 5 5 0.000000260094
Lonicera japonica GWHAAZE00000001 6 CH_lonja_971 4 7 0.000231018
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_737 4 6 0.000256619
Manihot esculenta Chromosome18 6 CH_mes_115 8 8 0.0000000000000377808
Manihot esculenta Chromosome04 6 CH_mes_353 5 6 0.00000125141
Manihot esculenta Chromosome13 6 CH_mes_469 4 4 0.0000367023
Manihot esculenta Chromosome05 6 CH_mes_90 9 9 2.11137e-16
Marchantia polymorpha scaffold_42 6 CH_mpo_62 5 6 0.0000000397382
Medicago truncatula chr1 6 CH_mtr_239 8 12 0.000000000000591692
Medicago truncatula chr3 6 CH_mtr_440 6 9 0.00000000830697
Medicago truncatula chr5 6 CH_mtr_898 4 5 0.000040078
Medicago truncatula chr2 6 CH_mtr_899 4 5 0.000040078
Nicotiana tabacum Nitab4.5_0000205 6 CH_nta_343 4 9 0.000858512
Nicotiana tabacum Nitab4.5_0000686 6 CH_nta_70 6 10 0.0000000259517
Olea europaea chr22 6 CH_oeu_578 4 7 0.000415732
Oryza sativa ssp. japonica chr09 6 CH_osa_423 5 12 0.0000195606
Papaver somniferum NC_039362.1 6 CH_pso_1284 3 3 0.00098498
Populus trichocarpa Chr14 6 CH_ptr_293 6 8 0.0000000363157
Populus trichocarpa Chr19 6 CH_ptr_95 12 27 6.65665e-16
Quercus lobata CM012294 6 CH_qlo_1498 4 6 0.000157755
Quercus lobata CM012294 6 CH_qlo_46 17 21 2.51687e-33
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_1278 5 23 0.000349059
Rhododendron simsii chr07 6 CH_rsi_116 9 9 1.12404e-16
Rhododendron simsii chr10 6 CH_rsi_609 4 4 0.0000270777
Salvia bowleyana GWHASIU00000005 6 CH_sbo_434 4 5 0.0000165153
Salix brachista GWHAAZH00000014 6 CH_sbr_166 7 10 0.000000000924512
Sechium edule LG10 6 CH_sed_22 13 18 5.49284e-21
Sechium edule LG13 6 CH_sed_302 4 4 0.00004818
Sechium edule LG11 6 CH_sed_32 10 11 3.17508e-17
Sequoiadendron giganteum chr1 6 CH_sgi_2373 3 3 0.000418209
Sequoiadendron giganteum chr2 6 CH_sgi_2374 3 3 0.000418209
Solanum pennellii Spenn-ch04 6 CH_spe_243 5 5 0.0000000299157
Solanum tuberosum ST4.03ch04 6 CH_stu_307 5 5 0.0000000266851
Solanum tuberosum ST4.03ch11 6 CH_stu_479 4 4 0.00000733371
Trochodendron aralioides group5 6 CH_tar_265 5 5 0.000000122234
Trochodendron aralioides group1 6 CH_tar_371 5 7 0.0000025451
Theobroma cacao Chromosome_4 6 CH_tca_760 5 20 0.00074239
Vanilla planifolia CM028158.1 6 CH_vpl_230 8 43 0.00000220012
Vitis vinifera chr1 6 CH_vvi_102 8 9 0.0000000000000135766
Zea mays 1 6 CH_zma_123 9 40 0.0000000106046

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001