Functional clusters

Information

  • Type InterPro
  • Description Ran GTPase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_8 5 CH_aly_480 3 24 0.000132041
Arabidopsis thaliana Chr5 5 CH_ath_580 2 3 0.000515668
Capsicum annuum PGAv.1.6.scaffold713 5 CH_can_666 2 2 0.000247831
Cicer arietinum L. Ca_LG5_v3 5 CH_car_73 3 4 0.000000145376
Corylus avellana 8 5 CH_cav_616 2 2 0.000230008
Cardamine hirsuta Chr6 5 CH_chi_584 2 2 0.000207361
Carya illinoinensis Chr07 5 CH_cil_793 2 2 0.000619828
Citrullus lanatus CG_Chr06 5 CH_cla_85 3 3 0.0000000472204
Capsella rubella scaffold_6 5 CH_cru_578 2 2 0.000438693
Cucumis sativus L. chr1 5 CH_csa_127 4 12 0.00000000431692
Daucus carota DCARv2_Chr1 5 CH_dca_501 2 2 0.000191333
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_805 2 2 0.000673083
Eucalyptus grandis Chr03 5 CH_egr_1423 3 20 0.000963162
Eucalyptus grandis Chr03 5 CH_egr_242 6 8 1.99882e-16
Fragaria vesca Fvb2 5 CH_fve_621 2 2 0.00017673
Gossypium hirsutum A06 5 CH_ghi_1101 2 2 0.000400523
Gossypium hirsutum D06 5 CH_ghi_1102 2 2 0.000400523
Glycine max Gm04 5 CH_gma_321 3 3 0.0000000756348
Glycine max Gm06 5 CH_gma_322 3 3 0.0000000756348
Gossypium raimondii Chr10 5 CH_gra_489 2 2 0.000160832
Lupinus albus Lalb_Chr08 5 CH_lal_579 2 2 0.000314895
Manihot esculenta Chromosome16 5 CH_mes_617 2 2 0.000366379
Medicago truncatula chr3 5 CH_mtr_449 3 3 0.0000000101287
Punica granatum NC_045129.1 5 CH_pgr_405 2 2 0.0000750356
Physcomitrium patens Chr23 5 CH_ppa_394 2 2 0.000919089
Prunus persica Pp01 5 CH_ppe_672 2 2 0.000223789
Pisum sativum chr5LG3 5 CH_psa_331 4 32 0.00000502915
Papaver somniferum NW_020634374.1 5 CH_pso_1076 2 2 0.000337941
Populus trichocarpa Chr18 5 CH_ptr_665 2 2 0.000346801
Populus trichocarpa Chr06 5 CH_ptr_666 2 2 0.000346801
Phaseolus vulgaris Chr09 5 CH_pvu_220 3 3 0.0000000323906
Quercus lobata CM012294 5 CH_qlo_1431 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_1094 2 2 0.000119596
Striga asiatica scaffold4 5 CH_sas_196 2 2 0.000375223
Salix brachista GWHAAZH00000018 5 CH_sbr_521 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000006 5 CH_sci_95 3 3 0.0000000108744
Sechium edule LG08 5 CH_sed_492 2 2 0.000713419
Solanum lycopersicum SL4.0ch01 5 CH_sly_850 2 3 0.000528221
Solanum pennellii Spenn-ch01 5 CH_spe_759 2 3 0.000400297
Vigna mungo CM024072.1 5 CH_vmu_502 2 2 0.000387685
Vitis vinifera chr4 5 CH_vvi_673 2 2 0.000456378
Zea mays 6 5 CH_zma_510 2 2 0.000766969
Arabidopsis lyrata scaffold_8 6 CH_aly_480 3 24 0.000132041
Arabidopsis thaliana Chr5 6 CH_ath_580 2 3 0.000515668
Capsicum annuum PGAv.1.6.scaffold713 6 CH_can_666 2 2 0.000247831
Cicer arietinum L. Ca_LG5_v3 6 CH_car_73 3 4 0.000000145376
Corylus avellana 8 6 CH_cav_616 2 2 0.000230008
Cardamine hirsuta Chr6 6 CH_chi_584 2 2 0.000207361
Carya illinoinensis Chr07 6 CH_cil_793 2 2 0.000619828
Citrullus lanatus CG_Chr06 6 CH_cla_85 3 3 0.0000000472204
Cucumis melo chr02 6 CH_cme_140 3 3 0.0000000267031
Capsella rubella scaffold_6 6 CH_cru_578 2 2 0.000438693
Cucumis sativus L. chr1 6 CH_csa_127 4 12 0.00000000431692
Daucus carota DCARv2_Chr1 6 CH_dca_501 2 2 0.000191333
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_805 2 2 0.000673083
Eucalyptus grandis Chr03 6 CH_egr_1423 3 20 0.000963162
Eucalyptus grandis Chr03 6 CH_egr_242 6 8 1.99882e-16
Fragaria vesca Fvb2 6 CH_fve_621 2 2 0.00017673
Gossypium hirsutum A06 6 CH_ghi_1101 2 2 0.000400523
Gossypium hirsutum D06 6 CH_ghi_1102 2 2 0.000400523
Glycine max Gm04 6 CH_gma_321 3 3 0.0000000756348
Glycine max Gm06 6 CH_gma_322 3 3 0.0000000756348
Gossypium raimondii Chr10 6 CH_gra_489 2 2 0.000160832
Lupinus albus Lalb_Chr08 6 CH_lal_579 2 2 0.000314895
Manihot esculenta Chromosome16 6 CH_mes_617 2 2 0.000366379
Medicago truncatula chr3 6 CH_mtr_449 3 3 0.0000000101287
Punica granatum NC_045129.1 6 CH_pgr_405 2 2 0.0000750356
Physcomitrium patens Chr23 6 CH_ppa_394 2 2 0.000919089
Prunus persica Pp01 6 CH_ppe_672 2 2 0.000223789
Pisum sativum chr5LG3 6 CH_psa_331 4 32 0.00000502915
Papaver somniferum NW_020634374.1 6 CH_pso_1076 2 2 0.000337941
Populus trichocarpa Chr18 6 CH_ptr_665 2 2 0.000346801
Populus trichocarpa Chr06 6 CH_ptr_666 2 2 0.000346801
Phaseolus vulgaris Chr09 6 CH_pvu_220 3 3 0.0000000323906
Quercus lobata CM012294 6 CH_qlo_1431 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_1094 2 2 0.000119596
Striga asiatica scaffold4 6 CH_sas_196 2 2 0.000375223
Salix brachista GWHAAZH00000018 6 CH_sbr_521 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000006 6 CH_sci_95 3 3 0.0000000108744
Sechium edule LG08 6 CH_sed_492 2 2 0.000713419
Solanum lycopersicum SL4.0ch01 6 CH_sly_850 2 3 0.000528221
Solanum pennellii Spenn-ch01 6 CH_spe_759 2 3 0.000400297
Vigna mungo CM024072.1 6 CH_vmu_502 2 2 0.000387685
Vitis vinifera chr4 6 CH_vvi_673 2 2 0.000456378
Zea mays 6 6 CH_zma_510 2 2 0.000766969

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001