Functional clusters
Information
- Type InterPro
- Description Pectate lyase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr11 | 5 | CH_acertr_414 | 3 | 3 | 0.0000050694 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_996 | 3 | 4 | 0.00015726 |
| Coffea canephora | chr9 | 5 | CH_ccan_33 | 5 | 16 | 0.000000000000150739 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_913 | 3 | 3 | 0.000125642 |
| Gossypium hirsutum | A06 | 5 | CH_ghi_914 | 3 | 3 | 0.000125642 |
| Gossypium hirsutum | D06 | 5 | CH_ghi_915 | 3 | 3 | 0.000125642 |
| Lupinus albus | Lalb_Chr03 | 5 | CH_lal_50 | 6 | 6 | 0.000000000000024739 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_339 | 4 | 8 | 0.0000000240605 |
| Petunia axillaris | Peaxi162Scf00451 | 5 | CH_pax_352 | 3 | 3 | 0.0000193054 |
| Prunus persica | Pp01 | 5 | CH_ppe_389 | 4 | 9 | 0.000000758345 |
| Quercus lobata | 12 | 5 | CH_qlo_957 | 5 | 40 | 0.00000116311 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1947 | 3 | 3 | 0.000115727 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_1948 | 3 | 3 | 0.000115727 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_31 | 16 | 16 | 1.45043e-42 |
| Selenicereus undatus | Scaffold_33679 | 5 | CH_sun_225 | 3 | 8 | 0.000126656 |
| Acer truncatum | chr11 | 6 | CH_acertr_414 | 3 | 3 | 0.0000050694 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_996 | 3 | 4 | 0.00015726 |
| Coffea canephora | chr9 | 6 | CH_ccan_33 | 5 | 16 | 0.000000000000150739 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_913 | 3 | 3 | 0.000125642 |
| Gossypium hirsutum | A06 | 6 | CH_ghi_914 | 3 | 3 | 0.000125642 |
| Gossypium hirsutum | D06 | 6 | CH_ghi_915 | 3 | 3 | 0.000125642 |
| Lupinus albus | Lalb_Chr03 | 6 | CH_lal_50 | 6 | 6 | 0.000000000000024739 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_339 | 4 | 8 | 0.0000000240605 |
| Petunia axillaris | Peaxi162Scf00451 | 6 | CH_pax_352 | 3 | 3 | 0.0000193054 |
| Prunus persica | Pp01 | 6 | CH_ppe_389 | 4 | 9 | 0.000000758345 |
| Quercus lobata | 12 | 6 | CH_qlo_957 | 5 | 40 | 0.00000116311 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1947 | 3 | 3 | 0.000115727 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_1948 | 3 | 3 | 0.000115727 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_31 | 16 | 16 | 1.45043e-42 |
| Selenicereus undatus | Scaffold_33679 | 6 | CH_sun_225 | 3 | 8 | 0.000126656 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |