Functional clusters
Information
- Type InterPro
- Description Glycoside hydrolase, family 35
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_111 | 7 | 33 | 0.0000000000195528 |
| Actinidia chinensis | Lachesis_group11 | 5 | CH_ach_216 | 3 | 3 | 0.0000101805 |
| Amborella trichopoda | AmTr_v1.0_scaffold00054 | 5 | CH_atr_429 | 3 | 7 | 0.000094633 |
| Brassica carinata | ChrB02 | 5 | CH_bca_91 | 6 | 6 | 0.00000000000000452555 |
| Brassica napus | A07 | 5 | CH_bna_1385 | 3 | 5 | 0.00054714 |
| Brassica napus | C06 | 5 | CH_bna_398 | 4 | 4 | 0.0000000427059 |
| Brassica napus | C06 | 5 | CH_bna_984 | 3 | 3 | 0.000054779 |
| Brassica rapa | A07 | 5 | CH_bra_64 | 5 | 5 | 0.0000000000190954 |
| Ceratophyllum demersum | 4 | 5 | CH_cde_153 | 3 | 3 | 0.00000636278 |
| Citrullus lanatus | CG_Chr03 | 5 | CH_cla_184 | 3 | 4 | 0.0000320935 |
| Carica papaya | supercontig_28 | 5 | CH_cpa_615 | 3 | 7 | 0.000837776 |
| Davidia involucrata | GWHABJS00000013 | 5 | CH_din_392 | 3 | 3 | 0.0000109745 |
| Davidia involucrata | GWHABJS00000012 | 5 | CH_din_444 | 3 | 4 | 0.0000438772 |
| Gossypium hirsutum | A06 | 5 | CH_ghi_765 | 3 | 3 | 0.0000329997 |
| Glycine max | Gm09 | 5 | CH_gma_565 | 3 | 3 | 0.0000398142 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_377 | 3 | 3 | 0.0000157534 |
| Hydrangea macrophylla | Hma1.2p1_0144F.1 | 5 | CH_hma_64 | 4 | 4 | 0.00000000135735 |
| Lupinus albus | Lalb_Chr08 | 5 | CH_lal_212 | 4 | 5 | 0.000000242524 |
| Lupinus albus | Lalb_Chr05 | 5 | CH_lal_92 | 5 | 5 | 0.0000000000484111 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_408 | 4 | 5 | 0.0000000407376 |
| Magnolia biondii | Chr11 | 5 | CH_mbi_97 | 8 | 19 | 0.00000000000000177685 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_272 | 3 | 3 | 0.00000283999 |
| Nicotiana tabacum | Nitab4.5_0000255 | 5 | CH_nta_238 | 3 | 8 | 0.000288593 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_373 | 3 | 3 | 0.0000149143 |
| Papaver somniferum | NW_020653081.1 | 5 | CH_pso_389 | 5 | 25 | 0.0000000145587 |
| Quercus lobata | 5 | 5 | CH_qlo_1167 | 3 | 3 | 0.0000285487 |
| Quercus lobata | 6 | 5 | CH_qlo_874 | 4 | 6 | 0.000000364317 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_340 | 6 | 17 | 0.0000000000909074 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_479 | 5 | 13 | 0.0000000139726 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1144 | 4 | 8 | 0.000000214657 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1520 | 3 | 4 | 0.000025208 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_268 | 8 | 21 | 2.0381e-17 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_253 | 4 | 4 | 0.0000000125245 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_529 | 3 | 4 | 0.000100495 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_400 | 3 | 4 | 0.0000688628 |
| Zea mays | 3 | 5 | CH_zma_323 | 3 | 4 | 0.0000458617 |
| Acer truncatum | chr1 | 6 | CH_acertr_111 | 7 | 33 | 0.0000000000195528 |
| Actinidia chinensis | Lachesis_group11 | 6 | CH_ach_216 | 3 | 3 | 0.0000101805 |
| Amborella trichopoda | AmTr_v1.0_scaffold00054 | 6 | CH_atr_429 | 3 | 7 | 0.000094633 |
| Brassica carinata | ChrB02 | 6 | CH_bca_91 | 6 | 6 | 0.00000000000000452555 |
| Brassica napus | A07 | 6 | CH_bna_1385 | 3 | 5 | 0.00054714 |
| Brassica napus | C06 | 6 | CH_bna_398 | 4 | 4 | 0.0000000427059 |
| Brassica napus | C06 | 6 | CH_bna_984 | 3 | 3 | 0.000054779 |
| Brassica rapa | A07 | 6 | CH_bra_64 | 5 | 5 | 0.0000000000190954 |
| Ceratophyllum demersum | 4 | 6 | CH_cde_153 | 3 | 3 | 0.00000636278 |
| Citrullus lanatus | CG_Chr03 | 6 | CH_cla_184 | 3 | 4 | 0.0000320935 |
| Cucumis melo | chr12 | 6 | CH_cme_215 | 4 | 6 | 0.00000237758 |
| Cucumis melo | chr04 | 6 | CH_cme_438 | 3 | 4 | 0.0004325 |
| Carica papaya | supercontig_28 | 6 | CH_cpa_615 | 3 | 7 | 0.000837776 |
| Davidia involucrata | GWHABJS00000013 | 6 | CH_din_392 | 3 | 3 | 0.0000109745 |
| Davidia involucrata | GWHABJS00000012 | 6 | CH_din_444 | 3 | 4 | 0.0000438772 |
| Gossypium hirsutum | A06 | 6 | CH_ghi_765 | 3 | 3 | 0.0000329997 |
| Glycine max | Gm09 | 6 | CH_gma_565 | 3 | 3 | 0.0000398142 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_377 | 3 | 3 | 0.0000157534 |
| Hydrangea macrophylla | Hma1.2p1_0144F.1 | 6 | CH_hma_64 | 4 | 4 | 0.00000000135735 |
| Lupinus albus | Lalb_Chr08 | 6 | CH_lal_212 | 4 | 5 | 0.000000242524 |
| Lupinus albus | Lalb_Chr05 | 6 | CH_lal_92 | 5 | 5 | 0.0000000000484111 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_408 | 4 | 5 | 0.0000000407376 |
| Magnolia biondii | Chr11 | 6 | CH_mbi_97 | 8 | 19 | 0.00000000000000177685 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_272 | 3 | 3 | 0.00000283999 |
| Nicotiana tabacum | Nitab4.5_0000255 | 6 | CH_nta_238 | 3 | 8 | 0.000288593 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_373 | 3 | 3 | 0.0000149143 |
| Papaver somniferum | NW_020653081.1 | 6 | CH_pso_389 | 5 | 25 | 0.0000000145587 |
| Quercus lobata | 5 | 6 | CH_qlo_1167 | 3 | 3 | 0.0000285487 |
| Quercus lobata | 6 | 6 | CH_qlo_874 | 4 | 6 | 0.000000364317 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_340 | 6 | 17 | 0.0000000000909074 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_479 | 5 | 13 | 0.0000000139726 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1144 | 4 | 8 | 0.000000214657 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1520 | 3 | 4 | 0.000025208 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_268 | 8 | 21 | 2.0381e-17 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_253 | 4 | 4 | 0.0000000125245 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_529 | 3 | 4 | 0.000100495 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_400 | 3 | 4 | 0.0000688628 |
| Zea mays | 3 | 6 | CH_zma_323 | 3 | 4 | 0.0000458617 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |