Functional clusters
Information
- Type InterPro
- Description Terpene synthase, N-terminal domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_340 | 5 | CH_aag_342 | 3 | 7 | 0.00059737 |
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_405 | 3 | 4 | 0.0000402359 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 5 | CH_arhy_419 | 5 | 8 | 0.0000000103863 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_576 | 3 | 9 | 0.000511957 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_1295 | 3 | 5 | 0.000417115 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_433 | 5 | 12 | 0.0000000283713 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_185 | 4 | 4 | 0.0000000627039 |
| Cannabis sativa | NC_044377.1 | 5 | CH_cansat_264 | 5 | 21 | 0.0000014033 |
| Capsicum annuum | PGAv.1.6.scaffold459 | 5 | CH_can_79 | 8 | 9 | 3.35474e-17 |
| Corylus avellana | 5 | 5 | CH_cav_28 | 12 | 43 | 1.57207e-21 |
| Coffea canephora | chr10 | 5 | CH_ccan_327 | 4 | 68 | 0.0000245131 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_439 | 3 | 5 | 0.0000121067 |
| Ceratophyllum demersum | 9 | 5 | CH_cde_501 | 2 | 2 | 0.000789796 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_118 | 7 | 8 | 0.0000000000000779887 |
| Citrullus lanatus | CG_Chr03 | 5 | CH_cla_77 | 4 | 4 | 0.0000000222581 |
| Carica papaya | supercontig_1 | 5 | CH_cpa_245 | 3 | 6 | 0.0000227579 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2939 | 5 | CH_cqu_137 | 8 | 39 | 0.00000000000544103 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2715 | 5 | CH_cqu_541 | 4 | 9 | 0.00000921966 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1447 | 5 | CH_cqu_971 | 3 | 5 | 0.000658932 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_157 | 5 | 7 | 0.0000000010666 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_174 | 4 | 5 | 0.0000000926597 |
| Cucumis sativus L. | chr1 | 5 | CH_csa_175 | 4 | 5 | 0.0000000926597 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_75 | 5 | 5 | 0.00000000000326838 |
| Davidia involucrata | GWHABJS00000020 | 5 | CH_din_324 | 4 | 7 | 0.00000137204 |
| Davidia involucrata | GWHABJS00000013 | 5 | CH_din_357 | 4 | 10 | 0.0000041108 |
| Davidia involucrata | GWHABJS00000020 | 5 | CH_din_840 | 3 | 7 | 0.000857335 |
| Durio zibethinus | NW_019167993.1 | 5 | CH_dzi_590 | 3 | 6 | 0.000738308 |
| Durio zibethinus | NW_019167993.1 | 5 | CH_dzi_73 | 7 | 19 | 0.00000000000105234 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_307 | 4 | 5 | 0.000000428238 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_443 | 4 | 9 | 0.000010752 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_334 | 7 | 9 | 0.0000000000000791248 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_459 | 4 | 9 | 0.0000362166 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_556 | 3 | 3 | 0.000165626 |
| Eutrema salsugineum | scaffold_20 | 5 | CH_esa_248 | 3 | 3 | 0.00000487118 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_418 | 4 | 6 | 0.00000194516 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_356 | 5 | 6 | 0.00000000210145 |
| Gossypium hirsutum | A11 | 5 | CH_ghi_387 | 5 | 7 | 0.00000000734689 |
| Gossypium hirsutum | D11 | 5 | CH_ghi_46 | 14 | 24 | 5.76103e-30 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_735 | 4 | 8 | 0.0000183041 |
| Glycine max | Gm13 | 5 | CH_gma_469 | 3 | 3 | 0.00000561859 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_171 | 5 | 5 | 0.00000000036863 |
| Lotus japonicus | chr3 | 5 | CH_lja_344 | 3 | 3 | 0.0000199428 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_245 | 6 | 19 | 0.0000000026555 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_434 | 5 | 10 | 0.000000206242 |
| Malus domestica | Chr17 | 5 | CH_mdo_220 | 5 | 6 | 0.0000000000612028 |
| Manihot esculenta | Chromosome12 | 5 | CH_mes_360 | 6 | 44 | 0.00000158561 |
| Manihot esculenta | Chromosome16 | 5 | CH_mes_373 | 4 | 6 | 0.00000198942 |
| Medicago truncatula | chr3 | 5 | CH_mtr_554 | 4 | 5 | 0.000000105297 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_397 | 3 | 6 | 0.0000673863 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_91 | 6 | 7 | 0.00000000000017855 |
| Petunia axillaris | Peaxi162Scf00082 | 5 | CH_pax_142 | 5 | 7 | 0.00000000815591 |
| Petunia axillaris | Peaxi162Scf00045 | 5 | CH_pax_365 | 4 | 9 | 0.0000301189 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_118 | 6 | 11 | 0.0000000000572085 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_182 | 5 | 9 | 0.0000000130071 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_2 | 14 | 15 | 2.33522e-36 |
| Prunus persica | Pp03 | 5 | CH_ppe_619 | 3 | 3 | 0.0000824705 |
| Quercus lobata | 10 | 5 | CH_qlo_801 | 5 | 10 | 0.00000013904 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_244 | 5 | 6 | 0.0000000000926232 |
| Rhododendron simsii | ctg121 | 5 | CH_rsi_600 | 3 | 3 | 0.0000228248 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_80 | 12 | 68 | 2.48832e-18 |
| Salix brachista | GWHAAZH00000019 | 5 | CH_sbr_74 | 6 | 6 | 0.00000000000000514831 |
| Sechium edule | LG11 | 5 | CH_sed_126 | 4 | 4 | 0.0000000258752 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_205 | 10 | 11 | 4.05723e-20 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_2156 | 4 | 7 | 0.000150083 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_683 | 3 | 5 | 0.000211647 |
| Trochodendron aralioides | group9 | 5 | CH_tar_15 | 11 | 25 | 4.37378e-23 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_287 | 4 | 4 | 0.0000000694291 |
| Theobroma cacao | Chromosome_7 | 5 | CH_tca_505 | 4 | 13 | 0.0000492083 |
| Theobroma cacao | Chromosome_7 | 5 | CH_tca_713 | 3 | 5 | 0.000573411 |
| Tripterygium wilfordii | NC_052252.1 | 5 | CH_twi_165 | 7 | 52 | 0.0000000898581 |
| Tripterygium wilfordii | NC_052248.1 | 5 | CH_twi_382 | 3 | 3 | 0.000143861 |
| Tripterygium wilfordii | NC_052234.1 | 5 | CH_twi_510 | 3 | 4 | 0.000574767 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_107 | 5 | 5 | 0.000000000132756 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_402 | 3 | 3 | 0.0000706708 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_647 | 3 | 4 | 0.000282375 |
| Vitis vinifera | chrUn | 5 | CH_vvi_233 | 8 | 50 | 0.0000000168951 |
| Zea mays | 10 | 5 | CH_zma_139 | 4 | 4 | 0.0000000209998 |
| Anthoceros agrestis | Sc2ySwM_340 | 6 | CH_aag_342 | 3 | 7 | 0.00059737 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_405 | 3 | 4 | 0.0000402359 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 6 | CH_arhy_419 | 5 | 8 | 0.0000000103863 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_576 | 3 | 9 | 0.000511957 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_1295 | 3 | 5 | 0.000417115 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_433 | 5 | 12 | 0.0000000283713 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_185 | 4 | 4 | 0.0000000627039 |
| Cannabis sativa | NC_044377.1 | 6 | CH_cansat_264 | 5 | 21 | 0.0000014033 |
| Capsicum annuum | PGAv.1.6.scaffold459 | 6 | CH_can_79 | 8 | 9 | 3.35474e-17 |
| Corylus avellana | 5 | 6 | CH_cav_28 | 12 | 43 | 1.57207e-21 |
| Coffea canephora | chr10 | 6 | CH_ccan_327 | 4 | 68 | 0.0000245131 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_439 | 3 | 5 | 0.0000121067 |
| Ceratophyllum demersum | 9 | 6 | CH_cde_501 | 2 | 2 | 0.000789796 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_118 | 7 | 8 | 0.0000000000000779887 |
| Citrullus lanatus | CG_Chr03 | 6 | CH_cla_77 | 4 | 4 | 0.0000000222581 |
| Carica papaya | supercontig_1 | 6 | CH_cpa_245 | 3 | 6 | 0.0000227579 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2939 | 6 | CH_cqu_137 | 8 | 39 | 0.00000000000544103 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2715 | 6 | CH_cqu_541 | 4 | 9 | 0.00000921966 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1447 | 6 | CH_cqu_971 | 3 | 5 | 0.000658932 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_157 | 5 | 7 | 0.0000000010666 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_174 | 4 | 5 | 0.0000000926597 |
| Cucumis sativus L. | chr1 | 6 | CH_csa_175 | 4 | 5 | 0.0000000926597 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_75 | 5 | 5 | 0.00000000000326838 |
| Davidia involucrata | GWHABJS00000020 | 6 | CH_din_324 | 4 | 7 | 0.00000137204 |
| Davidia involucrata | GWHABJS00000013 | 6 | CH_din_357 | 4 | 10 | 0.0000041108 |
| Davidia involucrata | GWHABJS00000020 | 6 | CH_din_840 | 3 | 7 | 0.000857335 |
| Durio zibethinus | NW_019167993.1 | 6 | CH_dzi_590 | 3 | 6 | 0.000738308 |
| Durio zibethinus | NW_019167993.1 | 6 | CH_dzi_73 | 7 | 19 | 0.00000000000105234 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_307 | 4 | 5 | 0.000000428238 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_443 | 4 | 9 | 0.000010752 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_334 | 7 | 9 | 0.0000000000000791248 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_459 | 4 | 9 | 0.0000362166 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_556 | 3 | 3 | 0.000165626 |
| Eutrema salsugineum | scaffold_20 | 6 | CH_esa_248 | 3 | 3 | 0.00000487118 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_814 | 3 | 3 | 0.0000855882 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_828 | 4 | 15 | 0.000105083 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_992 | 3 | 4 | 0.000342117 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_418 | 4 | 6 | 0.00000194516 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_356 | 5 | 6 | 0.00000000210145 |
| Gossypium hirsutum | A11 | 6 | CH_ghi_387 | 5 | 7 | 0.00000000734689 |
| Gossypium hirsutum | D11 | 6 | CH_ghi_46 | 14 | 24 | 5.76103e-30 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_735 | 4 | 8 | 0.0000183041 |
| Glycine max | Gm13 | 6 | CH_gma_469 | 3 | 3 | 0.00000561859 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_171 | 5 | 5 | 0.00000000036863 |
| Lotus japonicus | chr3 | 6 | CH_lja_344 | 3 | 3 | 0.0000199428 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_245 | 6 | 19 | 0.0000000026555 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_434 | 5 | 10 | 0.000000206242 |
| Malus domestica | Chr17 | 6 | CH_mdo_220 | 5 | 6 | 0.0000000000612028 |
| Manihot esculenta | Chromosome12 | 6 | CH_mes_360 | 6 | 44 | 0.00000158561 |
| Manihot esculenta | Chromosome16 | 6 | CH_mes_373 | 4 | 6 | 0.00000198942 |
| Medicago truncatula | chr3 | 6 | CH_mtr_554 | 4 | 5 | 0.000000105297 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_397 | 3 | 6 | 0.0000673863 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_91 | 6 | 7 | 0.00000000000017855 |
| Petunia axillaris | Peaxi162Scf00082 | 6 | CH_pax_142 | 5 | 7 | 0.00000000815591 |
| Petunia axillaris | Peaxi162Scf00045 | 6 | CH_pax_365 | 4 | 9 | 0.0000301189 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_118 | 6 | 11 | 0.0000000000572085 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_182 | 5 | 9 | 0.0000000130071 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_2 | 14 | 15 | 2.33522e-36 |
| Prunus persica | Pp03 | 6 | CH_ppe_619 | 3 | 3 | 0.0000824705 |
| Quercus lobata | 10 | 6 | CH_qlo_801 | 5 | 10 | 0.00000013904 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_244 | 5 | 6 | 0.0000000000926232 |
| Rhododendron simsii | ctg121 | 6 | CH_rsi_600 | 3 | 3 | 0.0000228248 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_80 | 12 | 68 | 2.48832e-18 |
| Salix brachista | GWHAAZH00000019 | 6 | CH_sbr_74 | 6 | 6 | 0.00000000000000514831 |
| Sechium edule | LG11 | 6 | CH_sed_126 | 4 | 4 | 0.0000000258752 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_205 | 10 | 11 | 4.05723e-20 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_2156 | 4 | 7 | 0.000150083 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_683 | 3 | 5 | 0.000211647 |
| Trochodendron aralioides | group9 | 6 | CH_tar_15 | 11 | 25 | 4.37378e-23 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_287 | 4 | 4 | 0.0000000694291 |
| Theobroma cacao | Chromosome_7 | 6 | CH_tca_505 | 4 | 13 | 0.0000492083 |
| Theobroma cacao | Chromosome_7 | 6 | CH_tca_713 | 3 | 5 | 0.000573411 |
| Tripterygium wilfordii | NC_052252.1 | 6 | CH_twi_165 | 7 | 52 | 0.0000000898581 |
| Tripterygium wilfordii | NC_052248.1 | 6 | CH_twi_382 | 3 | 3 | 0.000143861 |
| Tripterygium wilfordii | NC_052234.1 | 6 | CH_twi_510 | 3 | 4 | 0.000574767 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_107 | 5 | 5 | 0.000000000132756 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_402 | 3 | 3 | 0.0000706708 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_647 | 3 | 4 | 0.000282375 |
| Vitis vinifera | chrUn | 6 | CH_vvi_233 | 8 | 50 | 0.0000000168951 |
| Zea mays | 10 | 6 | CH_zma_139 | 4 | 4 | 0.0000000209998 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |