Functional clusters

Information

  • Type InterPro
  • Description Terpene synthase, N-terminal domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 5 CH_aag_342 3 7 0.00059737
Arabidopsis lyrata scaffold_4 5 CH_aly_405 3 4 0.0000402359
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 5 CH_arhy_419 5 8 0.0000000103863
Arabidopsis thaliana Chr3 5 CH_ath_576 3 9 0.000511957
Camellia sinensis var. sinensis Chr10 5 CH_camsi_1295 3 5 0.000417115
Camellia sinensis var. sinensis Chr7 5 CH_camsi_433 5 12 0.0000000283713
Cannabis sativa NC_044378.1 5 CH_cansat_185 4 4 0.0000000627039
Cannabis sativa NC_044377.1 5 CH_cansat_264 5 21 0.0000014033
Capsicum annuum PGAv.1.6.scaffold459 5 CH_can_79 8 9 3.35474e-17
Corylus avellana 5 5 CH_cav_28 12 43 1.57207e-21
Coffea canephora chr10 5 CH_ccan_327 4 68 0.0000245131
Citrus clementina scaffold_2 5 CH_ccl_439 3 5 0.0000121067
Ceratophyllum demersum 9 5 CH_cde_501 2 2 0.000789796
Carya illinoinensis Chr09 5 CH_cil_118 7 8 0.0000000000000779887
Citrullus lanatus CG_Chr03 5 CH_cla_77 4 4 0.0000000222581
Carica papaya supercontig_1 5 CH_cpa_245 3 6 0.0000227579
Chenopodium quinoa C_Quinoa_Scaffold_2939 5 CH_cqu_137 8 39 0.00000000000544103
Chenopodium quinoa C_Quinoa_Scaffold_2715 5 CH_cqu_541 4 9 0.00000921966
Chenopodium quinoa C_Quinoa_Scaffold_1447 5 CH_cqu_971 3 5 0.000658932
Capsella rubella scaffold_8 5 CH_cru_157 5 7 0.0000000010666
Cucumis sativus L. chr3 5 CH_csa_174 4 5 0.0000000926597
Cucumis sativus L. chr1 5 CH_csa_175 4 5 0.0000000926597
Daucus carota DCARv2_Chr7 5 CH_dca_75 5 5 0.00000000000326838
Davidia involucrata GWHABJS00000020 5 CH_din_324 4 7 0.00000137204
Davidia involucrata GWHABJS00000013 5 CH_din_357 4 10 0.0000041108
Davidia involucrata GWHABJS00000020 5 CH_din_840 3 7 0.000857335
Durio zibethinus NW_019167993.1 5 CH_dzi_590 3 6 0.000738308
Durio zibethinus NW_019167993.1 5 CH_dzi_73 7 19 0.00000000000105234
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_307 4 5 0.000000428238
Erigeron canadensis Conyza_canadensis_scaffold:4 5 CH_eca_443 4 9 0.000010752
Eucalyptus grandis Chr04 5 CH_egr_334 7 9 0.0000000000000791248
Erythranthe guttata scaffold_7 5 CH_egut_459 4 9 0.0000362166
Erythranthe guttata scaffold_14 5 CH_egut_556 3 3 0.000165626
Eutrema salsugineum scaffold_20 5 CH_esa_248 3 3 0.00000487118
Fragaria vesca Fvb3 5 CH_fve_418 4 6 0.00000194516
Gossypium hirsutum D10 5 CH_ghi_356 5 6 0.00000000210145
Gossypium hirsutum A11 5 CH_ghi_387 5 7 0.00000000734689
Gossypium hirsutum D11 5 CH_ghi_46 14 24 5.76103e-30
Gossypium hirsutum D10 5 CH_ghi_735 4 8 0.0000183041
Glycine max Gm13 5 CH_gma_469 3 3 0.00000561859
Gossypium raimondii Chr11 5 CH_gra_171 5 5 0.00000000036863
Lotus japonicus chr3 5 CH_lja_344 3 3 0.0000199428
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_245 6 19 0.0000000026555
Magnolia biondii Chr01 5 CH_mbi_434 5 10 0.000000206242
Malus domestica Chr17 5 CH_mdo_220 5 6 0.0000000000612028
Manihot esculenta Chromosome12 5 CH_mes_360 6 44 0.00000158561
Manihot esculenta Chromosome16 5 CH_mes_373 4 6 0.00000198942
Medicago truncatula chr3 5 CH_mtr_554 4 5 0.000000105297
Nelumbo nucifera chr1 5 CH_nnu_397 3 6 0.0000673863
Oryza sativa ssp. japonica chr03 5 CH_osa_91 6 7 0.00000000000017855
Petunia axillaris Peaxi162Scf00082 5 CH_pax_142 5 7 0.00000000815591
Petunia axillaris Peaxi162Scf00045 5 CH_pax_365 4 9 0.0000301189
Punica granatum NC_045127.1 5 CH_pgr_118 6 11 0.0000000000572085
Punica granatum NC_045130.1 5 CH_pgr_182 5 9 0.0000000130071
Punica granatum NC_045130.1 5 CH_pgr_2 14 15 2.33522e-36
Prunus persica Pp03 5 CH_ppe_619 3 3 0.0000824705
Quercus lobata 10 5 CH_qlo_801 5 10 0.00000013904
Rhododendron simsii chr12 5 CH_rsi_244 5 6 0.0000000000926232
Rhododendron simsii ctg121 5 CH_rsi_600 3 3 0.0000228248
Salvia bowleyana GWHASIU00000002 5 CH_sbo_80 12 68 2.48832e-18
Salix brachista GWHAAZH00000019 5 CH_sbr_74 6 6 0.00000000000000514831
Sechium edule LG11 5 CH_sed_126 4 4 0.0000000258752
Sequoiadendron giganteum chr4 5 CH_sgi_205 10 11 4.05723e-20
Sequoiadendron giganteum chr6 5 CH_sgi_2156 4 7 0.000150083
Solanum pennellii Spenn-ch08 5 CH_spe_683 3 5 0.000211647
Trochodendron aralioides group9 5 CH_tar_15 11 25 4.37378e-23
Theobroma cacao Chromosome_6 5 CH_tca_287 4 4 0.0000000694291
Theobroma cacao Chromosome_7 5 CH_tca_505 4 13 0.0000492083
Theobroma cacao Chromosome_7 5 CH_tca_713 3 5 0.000573411
Tripterygium wilfordii NC_052252.1 5 CH_twi_165 7 52 0.0000000898581
Tripterygium wilfordii NC_052248.1 5 CH_twi_382 3 3 0.000143861
Tripterygium wilfordii NC_052234.1 5 CH_twi_510 3 4 0.000574767
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_107 5 5 0.000000000132756
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_402 3 3 0.0000706708
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_647 3 4 0.000282375
Vitis vinifera chrUn 5 CH_vvi_233 8 50 0.0000000168951
Zea mays 10 5 CH_zma_139 4 4 0.0000000209998
Anthoceros agrestis Sc2ySwM_340 6 CH_aag_342 3 7 0.00059737
Arabidopsis lyrata scaffold_4 6 CH_aly_405 3 4 0.0000402359
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 6 CH_arhy_419 5 8 0.0000000103863
Arabidopsis thaliana Chr3 6 CH_ath_576 3 9 0.000511957
Camellia sinensis var. sinensis Chr10 6 CH_camsi_1295 3 5 0.000417115
Camellia sinensis var. sinensis Chr7 6 CH_camsi_433 5 12 0.0000000283713
Cannabis sativa NC_044378.1 6 CH_cansat_185 4 4 0.0000000627039
Cannabis sativa NC_044377.1 6 CH_cansat_264 5 21 0.0000014033
Capsicum annuum PGAv.1.6.scaffold459 6 CH_can_79 8 9 3.35474e-17
Corylus avellana 5 6 CH_cav_28 12 43 1.57207e-21
Coffea canephora chr10 6 CH_ccan_327 4 68 0.0000245131
Citrus clementina scaffold_2 6 CH_ccl_439 3 5 0.0000121067
Ceratophyllum demersum 9 6 CH_cde_501 2 2 0.000789796
Carya illinoinensis Chr09 6 CH_cil_118 7 8 0.0000000000000779887
Citrullus lanatus CG_Chr03 6 CH_cla_77 4 4 0.0000000222581
Carica papaya supercontig_1 6 CH_cpa_245 3 6 0.0000227579
Chenopodium quinoa C_Quinoa_Scaffold_2939 6 CH_cqu_137 8 39 0.00000000000544103
Chenopodium quinoa C_Quinoa_Scaffold_2715 6 CH_cqu_541 4 9 0.00000921966
Chenopodium quinoa C_Quinoa_Scaffold_1447 6 CH_cqu_971 3 5 0.000658932
Capsella rubella scaffold_8 6 CH_cru_157 5 7 0.0000000010666
Cucumis sativus L. chr3 6 CH_csa_174 4 5 0.0000000926597
Cucumis sativus L. chr1 6 CH_csa_175 4 5 0.0000000926597
Daucus carota DCARv2_Chr7 6 CH_dca_75 5 5 0.00000000000326838
Davidia involucrata GWHABJS00000020 6 CH_din_324 4 7 0.00000137204
Davidia involucrata GWHABJS00000013 6 CH_din_357 4 10 0.0000041108
Davidia involucrata GWHABJS00000020 6 CH_din_840 3 7 0.000857335
Durio zibethinus NW_019167993.1 6 CH_dzi_590 3 6 0.000738308
Durio zibethinus NW_019167993.1 6 CH_dzi_73 7 19 0.00000000000105234
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_307 4 5 0.000000428238
Erigeron canadensis Conyza_canadensis_scaffold:4 6 CH_eca_443 4 9 0.000010752
Eucalyptus grandis Chr04 6 CH_egr_334 7 9 0.0000000000000791248
Erythranthe guttata scaffold_7 6 CH_egut_459 4 9 0.0000362166
Erythranthe guttata scaffold_14 6 CH_egut_556 3 3 0.000165626
Eutrema salsugineum scaffold_20 6 CH_esa_248 3 3 0.00000487118
Fragaria x ananassa Fvb3-1 6 CH_fan_814 3 3 0.0000855882
Fragaria x ananassa Fvb3-2 6 CH_fan_828 4 15 0.000105083
Fragaria x ananassa Fvb2-4 6 CH_fan_992 3 4 0.000342117
Fragaria vesca Fvb3 6 CH_fve_418 4 6 0.00000194516
Gossypium hirsutum D10 6 CH_ghi_356 5 6 0.00000000210145
Gossypium hirsutum A11 6 CH_ghi_387 5 7 0.00000000734689
Gossypium hirsutum D11 6 CH_ghi_46 14 24 5.76103e-30
Gossypium hirsutum D10 6 CH_ghi_735 4 8 0.0000183041
Glycine max Gm13 6 CH_gma_469 3 3 0.00000561859
Gossypium raimondii Chr11 6 CH_gra_171 5 5 0.00000000036863
Lotus japonicus chr3 6 CH_lja_344 3 3 0.0000199428
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_245 6 19 0.0000000026555
Magnolia biondii Chr01 6 CH_mbi_434 5 10 0.000000206242
Malus domestica Chr17 6 CH_mdo_220 5 6 0.0000000000612028
Manihot esculenta Chromosome12 6 CH_mes_360 6 44 0.00000158561
Manihot esculenta Chromosome16 6 CH_mes_373 4 6 0.00000198942
Medicago truncatula chr3 6 CH_mtr_554 4 5 0.000000105297
Nelumbo nucifera chr1 6 CH_nnu_397 3 6 0.0000673863
Oryza sativa ssp. japonica chr03 6 CH_osa_91 6 7 0.00000000000017855
Petunia axillaris Peaxi162Scf00082 6 CH_pax_142 5 7 0.00000000815591
Petunia axillaris Peaxi162Scf00045 6 CH_pax_365 4 9 0.0000301189
Punica granatum NC_045127.1 6 CH_pgr_118 6 11 0.0000000000572085
Punica granatum NC_045130.1 6 CH_pgr_182 5 9 0.0000000130071
Punica granatum NC_045130.1 6 CH_pgr_2 14 15 2.33522e-36
Prunus persica Pp03 6 CH_ppe_619 3 3 0.0000824705
Quercus lobata 10 6 CH_qlo_801 5 10 0.00000013904
Rhododendron simsii chr12 6 CH_rsi_244 5 6 0.0000000000926232
Rhododendron simsii ctg121 6 CH_rsi_600 3 3 0.0000228248
Salvia bowleyana GWHASIU00000002 6 CH_sbo_80 12 68 2.48832e-18
Salix brachista GWHAAZH00000019 6 CH_sbr_74 6 6 0.00000000000000514831
Sechium edule LG11 6 CH_sed_126 4 4 0.0000000258752
Sequoiadendron giganteum chr4 6 CH_sgi_205 10 11 4.05723e-20
Sequoiadendron giganteum chr6 6 CH_sgi_2156 4 7 0.000150083
Solanum pennellii Spenn-ch08 6 CH_spe_683 3 5 0.000211647
Trochodendron aralioides group9 6 CH_tar_15 11 25 4.37378e-23
Theobroma cacao Chromosome_6 6 CH_tca_287 4 4 0.0000000694291
Theobroma cacao Chromosome_7 6 CH_tca_505 4 13 0.0000492083
Theobroma cacao Chromosome_7 6 CH_tca_713 3 5 0.000573411
Tripterygium wilfordii NC_052252.1 6 CH_twi_165 7 52 0.0000000898581
Tripterygium wilfordii NC_052248.1 6 CH_twi_382 3 3 0.000143861
Tripterygium wilfordii NC_052234.1 6 CH_twi_510 3 4 0.000574767
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_107 5 5 0.000000000132756
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_402 3 3 0.0000706708
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_647 3 4 0.000282375
Vitis vinifera chrUn 6 CH_vvi_233 8 50 0.0000000168951
Zea mays 10 6 CH_zma_139 4 4 0.0000000209998

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001