Functional clusters
Information
- Type InterPro
- Description EGF-like calcium-binding domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-6 | 5 | CH_aar_228 | 3 | 4 | 0.0000109835 |
| Actinidia chinensis | Lachesis_group28 | 5 | CH_ach_22 | 5 | 5 | 0.000000000000559617 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 5 | CH_arhy_179 | 6 | 8 | 0.00000000000000448335 |
| Brassica oleracea | C5 | 5 | CH_bol_351 | 4 | 14 | 0.00000156311 |
| Corylus avellana | 7 | 5 | CH_cav_217 | 4 | 6 | 0.0000000482311 |
| Corylus avellana | 7 | 5 | CH_cav_334 | 4 | 14 | 0.00000320738 |
| Corylus avellana | 7 | 5 | CH_cav_466 | 3 | 5 | 0.0000599072 |
| Coffea canephora | chr9 | 5 | CH_ccan_691 | 2 | 14 | 0.000702709 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_68 | 7 | 16 | 0.00000000000000539351 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_2 | 26 | 42 | 4.54378e-60 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_209 | 6 | 10 | 0.000000000124687 |
| Cucumis sativus L. | chr6 | 5 | CH_csa_90 | 5 | 8 | 0.00000000000941714 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_35 | 11 | 44 | 1.14769e-21 |
| Glycine max | Gm14 | 5 | CH_gma_147 | 5 | 9 | 0.0000000000398713 |
| Gossypium raimondii | Chr05 | 5 | CH_gra_41 | 9 | 14 | 3.95084e-22 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_866 | 3 | 4 | 0.0000884736 |
| Lotus japonicus | chr1 | 5 | CH_lja_41 | 6 | 10 | 0.0000000000000151497 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_159 | 6 | 14 | 0.0000000000068529 |
| Marchantia polymorpha | scaffold_7 | 5 | CH_mpo_54 | 4 | 6 | 0.0000000127242 |
| Marchantia polymorpha | scaffold_38 | 5 | CH_mpo_69 | 4 | 9 | 0.000000106781 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_351 | 5 | 27 | 0.000028344 |
| Olea europaea | chr14 | 5 | CH_oeu_24 | 8 | 14 | 3.65406e-16 |
| Olea europaea | chr23 | 5 | CH_oeu_48 | 7 | 18 | 0.00000000000360907 |
| Oryza sativa ssp. japonica | chr09 | 5 | CH_osa_225 | 5 | 8 | 0.0000000314279 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_404 | 4 | 7 | 0.0000118075 |
| Petunia axillaris | Peaxi162Scf00057 | 5 | CH_pax_336 | 3 | 3 | 0.0000131499 |
| Petunia axillaris | Peaxi162Scf00017 | 5 | CH_pax_337 | 3 | 3 | 0.0000131499 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_45 | 10 | 17 | 3.93552e-21 |
| Phaseolus vulgaris | Chr09 | 5 | CH_pvu_315 | 3 | 3 | 0.00000133611 |
| Quercus lobata | 9 | 5 | CH_qlo_129 | 13 | 76 | 1.8588e-22 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_23 | 18 | 78 | 9.97552e-36 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_22 | 16 | 40 | 1.67598e-35 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_368 | 4 | 10 | 0.00000186138 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_718 | 4 | 35 | 0.000458174 |
| Sechium edule | LG01 | 5 | CH_sed_28 | 7 | 9 | 1.28287e-18 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1063 | 5 | 13 | 0.0000000924317 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_116 | 13 | 32 | 1.7949e-26 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_200 | 10 | 21 | 2.50473e-20 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_2199 | 3 | 4 | 0.000246075 |
| Selenicereus undatus | Scaffold_33680 | 5 | CH_sun_379 | 2 | 2 | 0.000726639 |
| Aethionema arabicum | LG-6 | 6 | CH_aar_228 | 3 | 4 | 0.0000109835 |
| Actinidia chinensis | Lachesis_group28 | 6 | CH_ach_22 | 5 | 5 | 0.000000000000559617 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 6 | CH_arhy_179 | 6 | 8 | 0.00000000000000448335 |
| Brassica oleracea | C5 | 6 | CH_bol_351 | 4 | 14 | 0.00000156311 |
| Corylus avellana | 7 | 6 | CH_cav_217 | 4 | 6 | 0.0000000482311 |
| Corylus avellana | 7 | 6 | CH_cav_334 | 4 | 14 | 0.00000320738 |
| Corylus avellana | 7 | 6 | CH_cav_466 | 3 | 5 | 0.0000599072 |
| Coffea canephora | chr9 | 6 | CH_ccan_691 | 2 | 14 | 0.000702709 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_68 | 7 | 16 | 0.00000000000000539351 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_2 | 26 | 42 | 4.54378e-60 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_209 | 6 | 10 | 0.000000000124687 |
| Cucumis melo | chr03 | 6 | CH_cme_68 | 6 | 21 | 0.00000000000275948 |
| Cucumis sativus L. | chr6 | 6 | CH_csa_90 | 5 | 8 | 0.00000000000941714 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_35 | 11 | 44 | 1.14769e-21 |
| Glycine max | Gm14 | 6 | CH_gma_147 | 5 | 9 | 0.0000000000398713 |
| Gossypium raimondii | Chr05 | 6 | CH_gra_41 | 9 | 14 | 3.95084e-22 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_866 | 3 | 4 | 0.0000884736 |
| Lotus japonicus | chr1 | 6 | CH_lja_41 | 6 | 10 | 0.0000000000000151497 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_159 | 6 | 14 | 0.0000000000068529 |
| Marchantia polymorpha | scaffold_7 | 6 | CH_mpo_54 | 4 | 6 | 0.0000000127242 |
| Marchantia polymorpha | scaffold_38 | 6 | CH_mpo_69 | 4 | 9 | 0.000000106781 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_351 | 5 | 27 | 0.000028344 |
| Olea europaea | chr14 | 6 | CH_oeu_24 | 8 | 14 | 3.65406e-16 |
| Olea europaea | chr23 | 6 | CH_oeu_48 | 7 | 18 | 0.00000000000360907 |
| Oryza sativa ssp. japonica | chr09 | 6 | CH_osa_225 | 5 | 8 | 0.0000000314279 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_404 | 4 | 7 | 0.0000118075 |
| Petunia axillaris | Peaxi162Scf00057 | 6 | CH_pax_336 | 3 | 3 | 0.0000131499 |
| Petunia axillaris | Peaxi162Scf00017 | 6 | CH_pax_337 | 3 | 3 | 0.0000131499 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_45 | 10 | 17 | 3.93552e-21 |
| Phaseolus vulgaris | Chr09 | 6 | CH_pvu_315 | 3 | 3 | 0.00000133611 |
| Quercus lobata | 9 | 6 | CH_qlo_129 | 13 | 76 | 1.8588e-22 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_23 | 18 | 78 | 9.97552e-36 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_22 | 16 | 40 | 1.67598e-35 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_368 | 4 | 10 | 0.00000186138 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_718 | 4 | 35 | 0.000458174 |
| Sechium edule | LG01 | 6 | CH_sed_28 | 7 | 9 | 1.28287e-18 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1063 | 5 | 13 | 0.0000000924317 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_116 | 13 | 32 | 1.7949e-26 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_200 | 10 | 21 | 2.50473e-20 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_2199 | 3 | 4 | 0.000246075 |
| Selenicereus undatus | Scaffold_33680 | 6 | CH_sun_379 | 2 | 2 | 0.000726639 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |