Functional clusters

Information

  • Type InterPro
  • Description Zinc finger, RING-type

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_374 5 21 0.000956537
Arabidopsis lyrata scaffold_6 5 CH_aly_413 5 6 0.0000588113
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 5 CH_amhyb_271 4 4 0.000143624
Aquilegia oxysepala CHR03 5 CH_aox_256 8 27 0.0000085988
Arabidopsis thaliana Chr4 5 CH_ath_405 4 4 0.0000629193
Amborella trichopoda AmTr_v1.0_scaffold00086 5 CH_atr_144 6 6 0.00000000457919
Brassica carinata ChrC02 5 CH_bca_1080 5 5 0.0000131821
Brassica carinata ChrB05 5 CH_bca_1177 6 10 0.0000284919
Brassica napus A06 5 CH_bna_901 6 10 0.0000277622
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_255 5 5 0.00000329282
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_256 5 5 0.00000329282
Beta vulgaris Chr1_EL10_PGA_scaffold3 5 CH_bvu_257 5 5 0.00000329282
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_331 5 7 0.0000679371
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_34 11 13 3.21382e-16
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_388 6 16 0.00015975
Camellia sinensis var. sinensis Chr10 5 CH_camsi_83 13 20 6.31545e-18
Citrus clementina scaffold_1 5 CH_ccl_674 4 4 0.000364015
Carpinus fangiana Cfa04 5 CH_cfa_523 4 4 0.000322018
Cardamine hirsuta Chr1 5 CH_chi_760 4 4 0.000659363
Carya illinoinensis Chr06 5 CH_cil_495 5 5 0.0000089848
Carya illinoinensis Chr15 5 CH_cil_845 4 4 0.00073575
Carya illinoinensis Chr05 5 CH_cil_846 4 4 0.00073575
Citrullus lanatus CG_Chr03 5 CH_cla_146 5 5 0.00000238532
Carica papaya supercontig_55 5 CH_cpa_612 4 5 0.000702152
Chenopodium quinoa C_Quinoa_Scaffold_2088 5 CH_cqu_124 10 15 0.000000000000454592
Chenopodium quinoa C_Quinoa_Scaffold_3820 5 CH_cqu_195 9 17 0.0000000004011
Chenopodium quinoa C_Quinoa_Scaffold_1000 5 CH_cqu_577 5 6 0.0000158687
Chenopodium quinoa C_Quinoa_Scaffold_3876 5 CH_cqu_775 5 8 0.000145876
Chenopodium quinoa C_Quinoa_Scaffold_1067 5 CH_cqu_99 9 9 0.0000000000000176062
Capsella rubella scaffold_6 5 CH_cru_373 5 5 0.0000125564
Cucumis sativus L. chr1 5 CH_csa_225 7 14 0.00000140155
Durio zibethinus NW_019168381.1 5 CH_dzi_356 6 10 0.0000310267
Erigeron canadensis Conyza_canadensis_scaffold:6 5 CH_eca_231 6 7 0.0000000334509
Eucalyptus grandis Chr07 5 CH_egr_866 5 5 0.00000203294
Erythranthe guttata scaffold_9 5 CH_egut_213 7 7 0.00000000409263
Erythranthe guttata scaffold_6 5 CH_egut_288 7 9 0.000000143593
Erythranthe guttata scaffold_4 5 CH_egut_305 6 6 0.000000280279
Erythranthe guttata scaffold_7 5 CH_egut_431 5 5 0.0000191475
Eutrema salsugineum scaffold_3 5 CH_esa_490 4 4 0.000691101
Fragaria vesca Fvb5 5 CH_fve_211 13 53 0.00000000146804
Gossypium hirsutum D08 5 CH_ghi_757 5 5 0.0000271442
Gossypium hirsutum A09 5 CH_ghi_981 5 6 0.000161113
Helianthus annuus HanXRQChr02 5 CH_han_1052 5 8 0.000375651
Helianthus annuus HanXRQChr11 5 CH_han_1053 5 8 0.000375651
Helianthus annuus HanXRQChr15 5 CH_han_443 8 16 0.000000095536
Lonicera japonica GWHAAZE00000004 5 CH_lonja_807 6 16 0.000060341
Lonicera japonica GWHAAZE00000002 5 CH_lonja_846 4 4 0.000131414
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_467 6 9 0.00000306114
Malus domestica Chr11 5 CH_mdo_1277 4 4 0.000427752
Nicotiana tabacum Nitab4.5_0000838 5 CH_nta_185 4 4 0.0000824977
Oryza sativa ssp. japonica chr02 5 CH_osa_260 7 12 0.00000014131
Oryza sativa ssp. japonica chr02 5 CH_osa_621 5 9 0.000282241
Oryza sativa ssp. japonica chr06 5 CH_osa_66 12 20 0.00000000000000120516
Petunia axillaris Peaxi162Scf00182 5 CH_pax_589 4 4 0.000331948
Prunus persica Pp05 5 CH_ppe_720 5 8 0.000321334
Papaver somniferum NC_039363.1 5 CH_pso_1240 4 5 0.000696865
Papaver somniferum NW_020622270.1 5 CH_pso_1241 4 5 0.000696865
Papaver somniferum NC_039358.1 5 CH_pso_488 6 8 0.000000152494
Populus trichocarpa Chr10 5 CH_ptr_813 4 4 0.000933906
Phaseolus vulgaris Chr07 5 CH_pvu_262 6 6 0.000000209605
Phaseolus vulgaris Chr11 5 CH_pvu_96 11 16 0.000000000000438333
Quercus lobata 8 5 CH_qlo_1627 4 4 0.000360606
Quercus lobata 11 5 CH_qlo_320 9 9 0.000000000000031085
Quercus lobata 4 5 CH_qlo_492 9 14 0.0000000000595741
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_1165 8 46 0.000135867
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_1487 4 5 0.000933949
Rhododendron simsii chr05 5 CH_rsi_175 9 10 0.000000000000570491
Rhododendron simsii chr08 5 CH_rsi_607 5 6 0.0000267915
Rhododendron simsii chr09 5 CH_rsi_608 5 6 0.0000267915
Rhododendron simsii chr04 5 CH_rsi_999 6 18 0.000800054
Sechium edule LG06 5 CH_sed_524 4 4 0.000912102
Sequoiadendron giganteum chr9 5 CH_sgi_1942 5 12 0.000105401
Sequoiadendron giganteum chr8 5 CH_sgi_2366 5 15 0.00039465
Solanum lycopersicum SL4.0ch07 5 CH_sly_638 6 13 0.0000640414
Selaginella moellendorffii scaffold_18 5 CH_smo_31 8 10 0.00000000000993602
Schrenkiella parvula ch1-1 5 CH_spa_387 4 4 0.000869422
Theobroma cacao Chromosome_2 5 CH_tca_286 11 44 0.0000000690439
Theobroma cacao Chromosome_7 5 CH_tca_430 5 5 0.00000575719
Tarenaya hassleriana NW_010964923.1 5 CH_tha_355 7 25 0.000701422
Trifolium pratense Tp57577_TGAC_v2_LG1 5 CH_tpr_665 4 4 0.000436292
Trifolium pratense Tp57577_TGAC_v2_scaf_214 5 CH_tpr_666 4 4 0.000436292
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_356 5 6 0.0000146176
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_547 4 4 0.000241449
Vitis vinifera chr1 5 CH_vvi_359 5 5 0.00000115386
Vitis vinifera chr7 5 CH_vvi_447 5 7 0.0000238925
Zea mays 5 5 CH_zma_173 6 6 0.000000106917
Zea mays 9 5 CH_zma_77 9 12 0.0000000000365979
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_374 5 21 0.000956537
Arabidopsis lyrata scaffold_6 6 CH_aly_413 5 6 0.0000588113
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 6 CH_amhyb_271 4 4 0.000143624
Aquilegia oxysepala CHR03 6 CH_aox_256 8 27 0.0000085988
Arabidopsis thaliana Chr4 6 CH_ath_405 4 4 0.0000629193
Amborella trichopoda AmTr_v1.0_scaffold00086 6 CH_atr_144 6 6 0.00000000457919
Brassica carinata ChrC02 6 CH_bca_1080 5 5 0.0000131821
Brassica carinata ChrB05 6 CH_bca_1177 6 10 0.0000284919
Brassica napus A06 6 CH_bna_901 6 10 0.0000277622
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_255 5 5 0.00000329282
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_256 5 5 0.00000329282
Beta vulgaris Chr1_EL10_PGA_scaffold3 6 CH_bvu_257 5 5 0.00000329282
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_331 5 7 0.0000679371
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_34 11 13 3.21382e-16
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_388 6 16 0.00015975
Camellia sinensis var. sinensis Chr10 6 CH_camsi_83 13 20 6.31545e-18
Citrus clementina scaffold_1 6 CH_ccl_674 4 4 0.000364015
Carpinus fangiana Cfa04 6 CH_cfa_523 4 4 0.000322018
Cardamine hirsuta Chr1 6 CH_chi_760 4 4 0.000659363
Carya illinoinensis Chr06 6 CH_cil_495 5 5 0.0000089848
Carya illinoinensis Chr15 6 CH_cil_845 4 4 0.00073575
Carya illinoinensis Chr05 6 CH_cil_846 4 4 0.00073575
Citrullus lanatus CG_Chr03 6 CH_cla_146 5 5 0.00000238532
Carica papaya supercontig_55 6 CH_cpa_612 4 5 0.000702152
Chenopodium quinoa C_Quinoa_Scaffold_2088 6 CH_cqu_124 10 15 0.000000000000454592
Chenopodium quinoa C_Quinoa_Scaffold_3820 6 CH_cqu_195 9 17 0.0000000004011
Chenopodium quinoa C_Quinoa_Scaffold_1000 6 CH_cqu_577 5 6 0.0000158687
Chenopodium quinoa C_Quinoa_Scaffold_3876 6 CH_cqu_775 5 8 0.000145876
Chenopodium quinoa C_Quinoa_Scaffold_1067 6 CH_cqu_99 9 9 0.0000000000000176062
Capsella rubella scaffold_6 6 CH_cru_373 5 5 0.0000125564
Cucumis sativus L. chr1 6 CH_csa_225 7 14 0.00000140155
Durio zibethinus NW_019168381.1 6 CH_dzi_356 6 10 0.0000310267
Erigeron canadensis Conyza_canadensis_scaffold:6 6 CH_eca_231 6 7 0.0000000334509
Eucalyptus grandis Chr07 6 CH_egr_866 5 5 0.00000203294
Erythranthe guttata scaffold_9 6 CH_egut_213 7 7 0.00000000409263
Erythranthe guttata scaffold_6 6 CH_egut_288 7 9 0.000000143593
Erythranthe guttata scaffold_4 6 CH_egut_305 6 6 0.000000280279
Erythranthe guttata scaffold_7 6 CH_egut_431 5 5 0.0000191475
Eutrema salsugineum scaffold_3 6 CH_esa_490 4 4 0.000691101
Fragaria vesca Fvb5 6 CH_fve_211 13 53 0.00000000146804
Gossypium hirsutum D08 6 CH_ghi_757 5 5 0.0000271442
Gossypium hirsutum A09 6 CH_ghi_981 5 6 0.000161113
Helianthus annuus HanXRQChr02 6 CH_han_1052 5 8 0.000375651
Helianthus annuus HanXRQChr11 6 CH_han_1053 5 8 0.000375651
Helianthus annuus HanXRQChr15 6 CH_han_443 8 16 0.000000095536
Lonicera japonica GWHAAZE00000004 6 CH_lonja_807 6 16 0.000060341
Lonicera japonica GWHAAZE00000002 6 CH_lonja_846 4 4 0.000131414
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_467 6 9 0.00000306114
Malus domestica Chr11 6 CH_mdo_1277 4 4 0.000427752
Nicotiana tabacum Nitab4.5_0000838 6 CH_nta_185 4 4 0.0000824977
Oryza sativa ssp. japonica chr02 6 CH_osa_260 7 12 0.00000014131
Oryza sativa ssp. japonica chr02 6 CH_osa_621 5 9 0.000282241
Oryza sativa ssp. japonica chr06 6 CH_osa_66 12 20 0.00000000000000120516
Petunia axillaris Peaxi162Scf00182 6 CH_pax_589 4 4 0.000331948
Prunus persica Pp05 6 CH_ppe_720 5 8 0.000321334
Papaver somniferum NC_039363.1 6 CH_pso_1240 4 5 0.000696865
Papaver somniferum NW_020622270.1 6 CH_pso_1241 4 5 0.000696865
Papaver somniferum NC_039358.1 6 CH_pso_488 6 8 0.000000152494
Populus trichocarpa Chr10 6 CH_ptr_813 4 4 0.000933906
Phaseolus vulgaris Chr07 6 CH_pvu_262 6 6 0.000000209605
Phaseolus vulgaris Chr11 6 CH_pvu_96 11 16 0.000000000000438333
Quercus lobata 8 6 CH_qlo_1627 4 4 0.000360606
Quercus lobata 11 6 CH_qlo_320 9 9 0.000000000000031085
Quercus lobata 4 6 CH_qlo_492 9 14 0.0000000000595741
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_1165 8 46 0.000135867
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_1487 4 5 0.000933949
Rhododendron simsii chr05 6 CH_rsi_175 9 10 0.000000000000570491
Rhododendron simsii chr08 6 CH_rsi_607 5 6 0.0000267915
Rhododendron simsii chr09 6 CH_rsi_608 5 6 0.0000267915
Rhododendron simsii chr04 6 CH_rsi_999 6 18 0.000800054
Sechium edule LG06 6 CH_sed_524 4 4 0.000912102
Sequoiadendron giganteum chr9 6 CH_sgi_1942 5 12 0.000105401
Sequoiadendron giganteum chr8 6 CH_sgi_2366 5 15 0.00039465
Solanum lycopersicum SL4.0ch07 6 CH_sly_638 6 13 0.0000640414
Selaginella moellendorffii scaffold_18 6 CH_smo_31 8 10 0.00000000000993602
Schrenkiella parvula ch1-1 6 CH_spa_387 4 4 0.000869422
Theobroma cacao Chromosome_2 6 CH_tca_286 11 44 0.0000000690439
Theobroma cacao Chromosome_7 6 CH_tca_430 5 5 0.00000575719
Tarenaya hassleriana NW_010964923.1 6 CH_tha_355 7 25 0.000701422
Trifolium pratense Tp57577_TGAC_v2_LG1 6 CH_tpr_665 4 4 0.000436292
Trifolium pratense Tp57577_TGAC_v2_scaf_214 6 CH_tpr_666 4 4 0.000436292
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_356 5 6 0.0000146176
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_547 4 4 0.000241449
Vitis vinifera chr1 6 CH_vvi_359 5 5 0.00000115386
Vitis vinifera chr7 6 CH_vvi_447 5 7 0.0000238925
Zea mays 5 6 CH_zma_173 6 6 0.000000106917
Zea mays 9 6 CH_zma_77 9 12 0.0000000000365979

Available child term results

Ontology identifier Description Number of clusters
IPR018957 Zinc finger, C3HC4 RING-type 4
IPR024766 Zinc finger, RING-H2-type 13
IPR024991 Anaphase-promoting complex subunit 11, RING-H2 finger 2
IPR027370 RING-type zinc-finger, LisH dimerisation motif 2
IPR027934 Cellulose synthase, RING-type zinc finger 10
IPR039804 Listerin, zinc finger, RING-type 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001