Functional clusters

Information

  • Type InterPro
  • Description F-box domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_368 5 CH_aag_111 11 63 0.000000566181
Aethionema arabicum LG-3 5 CH_aar_257 5 6 0.000065605
Aethionema arabicum LG-11 5 CH_aar_311 5 7 0.000226989
Acer truncatum chr4 5 CH_acertr_519 4 4 0.0000541305
Arabidopsis lyrata scaffold_6 5 CH_aly_150 9 10 0.00000000172502
Arabidopsis lyrata scaffold_4 5 CH_aly_368 6 6 0.00000992416
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 5 CH_amhyb_196 4 4 0.0000424799
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 5 CH_amhyb_83 7 13 0.0000000181069
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_447 6 6 0.0000000328523
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_448 6 6 0.0000000328523
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_765 11 80 0.00001043
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 5 CH_arhy_918 5 7 0.0000768306
Amborella trichopoda AmTr_v1.0_scaffold00017 5 CH_atr_529 4 6 0.000305018
Brassica carinata ChrC04 5 CH_bca_1829 6 12 0.000464416
Brassica carinata ChrB01 5 CH_bca_2059 11 78 0.000776114
Brassica oleracea C3 5 CH_bol_324 7 10 0.000000804872
Brassica rapa A03 5 CH_bra_592 6 12 0.000778621
Cannabis sativa NC_044372.1 5 CH_cansat_11 21 39 3.38424e-31
Capsicum annuum PGAv.1.6.scaffold567 5 CH_can_216 13 57 0.00000000367014
Capsicum annuum PGAv.1.6.scaffold626 5 CH_can_805 4 4 0.000522985
Capsicum annuum PGAv.1.6.scaffold623 5 CH_can_813 9 56 0.000580942
Cicer arietinum L. Ca_LG3_v3 5 CH_car_253 5 12 0.00013783
Corylus avellana 1 5 CH_cav_686 8 52 0.000453637
Corylus avellana 5 5 CH_cav_797 4 5 0.000762577
Citrus clementina scaffold_2 5 CH_ccl_673 4 4 0.000327643
Carpinus fangiana Cfa06 5 CH_cfa_99 8 9 0.00000000000180626
Carya illinoinensis Chr10 5 CH_cil_338 6 9 0.000000149053
Citrullus lanatus CG_Chr01 5 CH_cla_250 4 5 0.000146386
Chenopodium quinoa C_Quinoa_Scaffold_1765 5 CH_cqu_1027 5 9 0.000814292
Chenopodium quinoa C_Quinoa_Scaffold_1817 5 CH_cqu_963 4 4 0.000613732
Chenopodium quinoa C_Quinoa_Scaffold_2193 5 CH_cqu_964 4 4 0.000613732
Capsella rubella scaffold_4 5 CH_cru_289 10 19 0.000000663499
Cucumis sativus L. chr6 5 CH_csa_298 4 4 0.0000308321
Daucus carota DCARv2_Chr9 5 CH_dca_559 4 4 0.00021546
Davidia involucrata GWHABJS00000008 5 CH_din_154 9 19 0.000000000642981
Davidia involucrata GWHABJS00000018 5 CH_din_198 9 24 0.00000000876971
Davidia involucrata GWHABJS00000010 5 CH_din_98 9 11 0.000000000000406201
Durio zibethinus NW_019168492.1 5 CH_dzi_331 5 7 0.0000160614
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_340 5 5 0.00000103765
Erigeron canadensis Conyza_canadensis_scaffold:6 5 CH_eca_392 6 11 0.00000343845
Eucalyptus grandis Chr05 5 CH_egr_447 8 11 0.0000000000380135
Eucalyptus grandis Chr06 5 CH_egr_896 5 6 0.00000394086
Erythranthe guttata scaffold_12 5 CH_egut_535 5 5 0.000100286
Fragaria vesca Fvb4 5 CH_fve_421 8 15 0.00000222071
Fragaria vesca Fvb2 5 CH_fve_518 6 8 0.00003241
Gossypium hirsutum D11 5 CH_ghi_1315 4 4 0.000916105
Gossypium hirsutum D02 5 CH_ghi_174 9 10 0.0000000000000304
Gossypium hirsutum D02 5 CH_ghi_753 6 14 0.0000258599
Gossypium hirsutum D05 5 CH_ghi_929 5 9 0.000158964
Glycine max Gm09 5 CH_gma_110 11 28 0.00000000000124522
Glycine max Gm03 5 CH_gma_613 4 4 0.000110407
Glycine max Gm19 5 CH_gma_68 9 9 0.00000000000000146938
Gossypium raimondii Chr09 5 CH_gra_220 7 11 0.0000000237139
Gossypium raimondii Chr05 5 CH_gra_688 5 12 0.000902262
Helianthus annuus HanXRQChr13 5 CH_han_760 6 9 0.0000253772
Hydrangea macrophylla Hma1.2p1_0189F.1 5 CH_hma_24 9 13 0.0000000000000400095
Lupinus albus Lalb_Chr02 5 CH_lal_382 4 4 0.0000434969
Lupinus albus Lalb_Chr25 5 CH_lal_52 10 17 0.0000000000000274606
Lotus japonicus chr1 5 CH_lja_132 7 10 0.0000000212964
Lonicera japonica GWHAAZE00000005 5 CH_lonja_633 7 16 0.0000123018
Lonicera japonica GWHAAZE00000008 5 CH_lonja_683 8 28 0.0000352366
Lactuca sativa Lsat_1_v8_lg_7 5 CH_lsa_143 11 21 0.00000000000311842
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_858 5 9 0.000743666
Malus domestica Chr17 5 CH_mdo_1282 4 5 0.000483124
Manihot esculenta Chromosome18 5 CH_mes_263 6 7 0.000000026978
Medicago truncatula chr4 5 CH_mtr_621 8 12 0.000000394562
Medicago truncatula chr2 5 CH_mtr_682 12 43 0.000000978954
Medicago truncatula chr7 5 CH_mtr_846 7 11 0.0000138547
Medicago truncatula chr4 5 CH_mtr_988 6 8 0.0000639409
Nicotiana tabacum Nitab4.5_0000027 5 CH_nta_87 7 15 0.000000158793
Oryza sativa ssp. japonica chr07 5 CH_osa_615 4 4 0.000265431
Petunia axillaris Peaxi162Scf00121 5 CH_pax_85 10 16 0.0000000000371246
Prunus persica Pp02 5 CH_ppe_452 5 5 0.00000425164
Pisum sativum chr5LG3 5 CH_psa_130 8 15 0.000000000692378
Pisum sativum chr2LG1 5 CH_psa_701 5 13 0.00053528
Pisum sativum chr7LG7 5 CH_psa_719 7 46 0.000760312
Papaver somniferum NC_039367.1 5 CH_pso_839 5 5 0.0000426369
Phaseolus vulgaris Chr01 5 CH_pvu_414 5 9 0.0000540897
Phaseolus vulgaris Chr09 5 CH_pvu_565 4 5 0.000317909
Quercus lobata 10 5 CH_qlo_1034 6 7 0.00000418068
Quercus lobata 4 5 CH_qlo_677 15 71 0.0000000135091
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_1061 6 12 0.0000851262
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_393 10 22 0.000000000840721
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_772 6 8 0.00000268032
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_773 6 8 0.00000268032
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_812 11 62 0.00000490139
Rhododendron simsii chr03 5 CH_rsi_538 5 5 0.00000450549
Striga asiatica scaffold5 5 CH_sas_36 7 11 0.0000000210391
Salvia bowleyana GWHASIU00000001 5 CH_sbo_112 13 43 0.0000000000000104511
Salix brachista GWHAAZH00000011 5 CH_sbr_380 6 14 0.0000089181
Salix brachista GWHAAZH00000017 5 CH_sbr_444 5 9 0.0000570828
Sechium edule LG06 5 CH_sed_115 7 11 0.00000000737505
Sechium edule LG08 5 CH_sed_310 4 4 0.0000690608
Sequoiadendron giganteum chr8 5 CH_sgi_1937 4 5 0.0000988497
Sequoiadendron giganteum chr3 5 CH_sgi_754 6 7 0.00000000294825
Solanum lycopersicum SL4.0ch05 5 CH_sly_784 4 5 0.00034269
Solanum tuberosum ST4.03ch09 5 CH_stu_354 9 26 0.000000142242
Solanum tuberosum ST4.03ch05 5 CH_stu_457 11 66 0.00000356289
Trochodendron aralioides group13 5 CH_tar_30 14 24 3.12302e-19
Trochodendron aralioides group3 5 CH_tar_601 4 4 0.000153586
Theobroma cacao Chromosome_10 5 CH_tca_89 10 13 0.00000000000000985759
Trifolium pratense Tp57577_TGAC_v2_LG1 5 CH_tpr_518 5 8 0.0000788774
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_555 4 4 0.000163966
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_790 4 5 0.000814038
Tripterygium wilfordii NC_052252.1 5 CH_twi_136 6 6 0.00000000837615
Vitis vinifera chr13 5 CH_vvi_329 5 7 0.000000505921
Zea mays 2 5 CH_zma_301 4 4 0.0000224724
Zea mays 1 5 CH_zma_414 5 14 0.000209644
Zea mays 7 5 CH_zma_70 7 8 0.000000000019883
Anthoceros agrestis Sc2ySwM_368 6 CH_aag_111 11 63 0.000000566181
Aethionema arabicum LG-3 6 CH_aar_257 5 6 0.000065605
Aethionema arabicum LG-11 6 CH_aar_311 5 7 0.000226989
Acer truncatum chr4 6 CH_acertr_519 4 4 0.0000541305
Arabidopsis lyrata scaffold_6 6 CH_aly_150 9 10 0.00000000172502
Arabidopsis lyrata scaffold_4 6 CH_aly_368 6 6 0.00000992416
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 6 CH_amhyb_196 4 4 0.0000424799
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 6 CH_amhyb_83 7 13 0.0000000181069
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_447 6 6 0.0000000328523
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_448 6 6 0.0000000328523
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_765 11 80 0.00001043
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 6 CH_arhy_918 5 7 0.0000768306
Amborella trichopoda AmTr_v1.0_scaffold00017 6 CH_atr_529 4 6 0.000305018
Brassica carinata ChrC04 6 CH_bca_1829 6 12 0.000464416
Brassica carinata ChrB01 6 CH_bca_2059 11 78 0.000776114
Brassica oleracea C3 6 CH_bol_324 7 10 0.000000804872
Brassica rapa A03 6 CH_bra_592 6 12 0.000778621
Cannabis sativa NC_044372.1 6 CH_cansat_11 21 39 3.38424e-31
Capsicum annuum PGAv.1.6.scaffold567 6 CH_can_216 13 57 0.00000000367014
Capsicum annuum PGAv.1.6.scaffold626 6 CH_can_805 4 4 0.000522985
Capsicum annuum PGAv.1.6.scaffold623 6 CH_can_813 9 56 0.000580942
Cicer arietinum L. Ca_LG3_v3 6 CH_car_253 5 12 0.00013783
Corylus avellana 1 6 CH_cav_686 8 52 0.000453637
Corylus avellana 5 6 CH_cav_797 4 5 0.000762577
Citrus clementina scaffold_2 6 CH_ccl_673 4 4 0.000327643
Carpinus fangiana Cfa06 6 CH_cfa_99 8 9 0.00000000000180626
Carya illinoinensis Chr10 6 CH_cil_338 6 9 0.000000149053
Citrullus lanatus CG_Chr01 6 CH_cla_250 4 5 0.000146386
Chenopodium quinoa C_Quinoa_Scaffold_1765 6 CH_cqu_1027 5 9 0.000814292
Chenopodium quinoa C_Quinoa_Scaffold_1817 6 CH_cqu_963 4 4 0.000613732
Chenopodium quinoa C_Quinoa_Scaffold_2193 6 CH_cqu_964 4 4 0.000613732
Capsella rubella scaffold_4 6 CH_cru_289 10 19 0.000000663499
Cucumis sativus L. chr6 6 CH_csa_298 4 4 0.0000308321
Daucus carota DCARv2_Chr9 6 CH_dca_559 4 4 0.00021546
Davidia involucrata GWHABJS00000008 6 CH_din_154 9 19 0.000000000642981
Davidia involucrata GWHABJS00000018 6 CH_din_198 9 24 0.00000000876971
Davidia involucrata GWHABJS00000010 6 CH_din_98 9 11 0.000000000000406201
Durio zibethinus NW_019168492.1 6 CH_dzi_331 5 7 0.0000160614
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_340 5 5 0.00000103765
Erigeron canadensis Conyza_canadensis_scaffold:6 6 CH_eca_392 6 11 0.00000343845
Eucalyptus grandis Chr05 6 CH_egr_447 8 11 0.0000000000380135
Eucalyptus grandis Chr06 6 CH_egr_896 5 6 0.00000394086
Erythranthe guttata scaffold_12 6 CH_egut_535 5 5 0.000100286
Fragaria x ananassa Fvb4-4 6 CH_fan_290 7 8 0.0000000391111
Fragaria x ananassa Fvb4-2 6 CH_fan_913 5 6 0.000190791
Fragaria vesca Fvb4 6 CH_fve_421 8 15 0.00000222071
Fragaria vesca Fvb2 6 CH_fve_518 6 8 0.00003241
Gossypium hirsutum D11 6 CH_ghi_1315 4 4 0.000916105
Gossypium hirsutum D02 6 CH_ghi_174 9 10 0.0000000000000304
Gossypium hirsutum D02 6 CH_ghi_753 6 14 0.0000258599
Gossypium hirsutum D05 6 CH_ghi_929 5 9 0.000158964
Glycine max Gm09 6 CH_gma_110 11 28 0.00000000000124522
Glycine max Gm03 6 CH_gma_613 4 4 0.000110407
Glycine max Gm19 6 CH_gma_68 9 9 0.00000000000000146938
Gossypium raimondii Chr09 6 CH_gra_220 7 11 0.0000000237139
Gossypium raimondii Chr05 6 CH_gra_688 5 12 0.000902262
Helianthus annuus HanXRQChr13 6 CH_han_760 6 9 0.0000253772
Hydrangea macrophylla Hma1.2p1_0189F.1 6 CH_hma_24 9 13 0.0000000000000400095
Lupinus albus Lalb_Chr02 6 CH_lal_382 4 4 0.0000434969
Lupinus albus Lalb_Chr25 6 CH_lal_52 10 17 0.0000000000000274606
Lotus japonicus chr1 6 CH_lja_132 7 10 0.0000000212964
Lonicera japonica GWHAAZE00000005 6 CH_lonja_633 7 16 0.0000123018
Lonicera japonica GWHAAZE00000008 6 CH_lonja_683 8 28 0.0000352366
Lactuca sativa Lsat_1_v8_lg_7 6 CH_lsa_143 11 21 0.00000000000311842
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_858 5 9 0.000743666
Malus domestica Chr17 6 CH_mdo_1282 4 5 0.000483124
Manihot esculenta Chromosome18 6 CH_mes_263 6 7 0.000000026978
Medicago truncatula chr4 6 CH_mtr_621 8 12 0.000000394562
Medicago truncatula chr2 6 CH_mtr_682 12 43 0.000000978954
Medicago truncatula chr7 6 CH_mtr_846 7 11 0.0000138547
Medicago truncatula chr4 6 CH_mtr_988 6 8 0.0000639409
Nicotiana tabacum Nitab4.5_0000027 6 CH_nta_87 7 15 0.000000158793
Oryza sativa ssp. japonica chr07 6 CH_osa_615 4 4 0.000265431
Petunia axillaris Peaxi162Scf00121 6 CH_pax_85 10 16 0.0000000000371246
Prunus persica Pp02 6 CH_ppe_452 5 5 0.00000425164
Pisum sativum chr5LG3 6 CH_psa_130 8 15 0.000000000692378
Pisum sativum chr2LG1 6 CH_psa_701 5 13 0.00053528
Pisum sativum chr7LG7 6 CH_psa_719 7 46 0.000760312
Papaver somniferum NC_039367.1 6 CH_pso_839 5 5 0.0000426369
Phaseolus vulgaris Chr01 6 CH_pvu_414 5 9 0.0000540897
Phaseolus vulgaris Chr09 6 CH_pvu_565 4 5 0.000317909
Quercus lobata 10 6 CH_qlo_1034 6 7 0.00000418068
Quercus lobata 4 6 CH_qlo_677 15 71 0.0000000135091
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_1061 6 12 0.0000851262
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_393 10 22 0.000000000840721
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_772 6 8 0.00000268032
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_773 6 8 0.00000268032
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_812 11 62 0.00000490139
Rhododendron simsii chr03 6 CH_rsi_538 5 5 0.00000450549
Striga asiatica scaffold5 6 CH_sas_36 7 11 0.0000000210391
Salvia bowleyana GWHASIU00000001 6 CH_sbo_112 13 43 0.0000000000000104511
Salix brachista GWHAAZH00000011 6 CH_sbr_380 6 14 0.0000089181
Salix brachista GWHAAZH00000017 6 CH_sbr_444 5 9 0.0000570828
Sechium edule LG06 6 CH_sed_115 7 11 0.00000000737505
Sechium edule LG08 6 CH_sed_310 4 4 0.0000690608
Sequoiadendron giganteum chr8 6 CH_sgi_1937 4 5 0.0000988497
Sequoiadendron giganteum chr3 6 CH_sgi_754 6 7 0.00000000294825
Solanum lycopersicum SL4.0ch05 6 CH_sly_784 4 5 0.00034269
Solanum tuberosum ST4.03ch09 6 CH_stu_354 9 26 0.000000142242
Solanum tuberosum ST4.03ch05 6 CH_stu_457 11 66 0.00000356289
Trochodendron aralioides group13 6 CH_tar_30 14 24 3.12302e-19
Trochodendron aralioides group3 6 CH_tar_601 4 4 0.000153586
Theobroma cacao Chromosome_10 6 CH_tca_89 10 13 0.00000000000000985759
Trifolium pratense Tp57577_TGAC_v2_LG1 6 CH_tpr_518 5 8 0.0000788774
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_555 4 4 0.000163966
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_790 4 5 0.000814038
Tripterygium wilfordii NC_052252.1 6 CH_twi_136 6 6 0.00000000837615
Vitis vinifera chr13 6 CH_vvi_329 5 7 0.000000505921
Zea mays 2 6 CH_zma_301 4 4 0.0000224724
Zea mays 1 6 CH_zma_414 5 14 0.000209644
Zea mays 7 6 CH_zma_70 7 8 0.000000000019883

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001