Functional clusters
Information
- Type InterPro
- Description Signal transduction response regulator, receiver domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 5 | CH_aar_165 | 6 | 33 | 0.000000420043 |
| Aquilegia oxysepala | CHR06 | 5 | CH_aox_454 | 3 | 4 | 0.000325212 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_385 | 3 | 4 | 0.000150156 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_341 | 3 | 3 | 0.0000236337 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3792 | 5 | CH_cqu_965 | 3 | 4 | 0.000615716 |
| Daucus carota | DCARv2_Chr1 | 5 | CH_dca_150 | 5 | 6 | 0.00000000664411 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_1034 | 3 | 3 | 0.0000507668 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_1035 | 3 | 3 | 0.0000507668 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_704 | 3 | 4 | 0.000661613 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_364 | 3 | 3 | 0.000107349 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_752 | 3 | 5 | 0.000513459 |
| Gossypium hirsutum | D07 | 5 | CH_ghi_1154 | 3 | 3 | 0.000409936 |
| Lotus japonicus | chr2 | 5 | CH_lja_156 | 5 | 8 | 0.0000000417608 |
| Manihot esculenta | Chromosome07 | 5 | CH_mes_548 | 4 | 13 | 0.000152735 |
| Medicago truncatula | chr1 | 5 | CH_mtr_1109 | 3 | 3 | 0.000151019 |
| Medicago truncatula | chr4 | 5 | CH_mtr_1213 | 4 | 15 | 0.000288576 |
| Pisum sativum | chr3LG5 | 5 | CH_psa_712 | 5 | 63 | 0.000703147 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_290 | 8 | 66 | 0.0000000297366 |
| Quercus lobata | 8 | 5 | CH_qlo_1323 | 3 | 3 | 0.0000691566 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_2157 | 3 | 4 | 0.000151682 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_391 | 7 | 14 | 0.0000000000000808157 |
| Sapria himalayana | scaffold14_12630789 | 5 | CH_shi_589 | 3 | 20 | 0.00091941 |
| Vigna mungo | CM024069.1 | 5 | CH_vmu_613 | 3 | 4 | 0.000771909 |
| Vitis vinifera | chr13_random | 5 | CH_vvi_128 | 6 | 7 | 0.00000000000210182 |
| Aethionema arabicum | LG-2 | 6 | CH_aar_165 | 6 | 33 | 0.000000420043 |
| Aquilegia oxysepala | CHR06 | 6 | CH_aox_454 | 3 | 4 | 0.000325212 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_385 | 3 | 4 | 0.000150156 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_341 | 3 | 3 | 0.0000236337 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3792 | 6 | CH_cqu_965 | 3 | 4 | 0.000615716 |
| Daucus carota | DCARv2_Chr1 | 6 | CH_dca_150 | 5 | 6 | 0.00000000664411 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_1034 | 3 | 3 | 0.0000507668 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_1035 | 3 | 3 | 0.0000507668 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_704 | 3 | 4 | 0.000661613 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_364 | 3 | 3 | 0.000107349 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_1279 | 3 | 4 | 0.00091859 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_930 | 3 | 3 | 0.000229868 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_752 | 3 | 5 | 0.000513459 |
| Gossypium hirsutum | D07 | 6 | CH_ghi_1154 | 3 | 3 | 0.000409936 |
| Lotus japonicus | chr2 | 6 | CH_lja_156 | 5 | 8 | 0.0000000417608 |
| Manihot esculenta | Chromosome07 | 6 | CH_mes_548 | 4 | 13 | 0.000152735 |
| Medicago truncatula | chr1 | 6 | CH_mtr_1109 | 3 | 3 | 0.000151019 |
| Medicago truncatula | chr4 | 6 | CH_mtr_1213 | 4 | 15 | 0.000288576 |
| Pisum sativum | chr3LG5 | 6 | CH_psa_712 | 5 | 63 | 0.000703147 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_290 | 8 | 66 | 0.0000000297366 |
| Quercus lobata | 8 | 6 | CH_qlo_1323 | 3 | 3 | 0.0000691566 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_2157 | 3 | 4 | 0.000151682 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_391 | 7 | 14 | 0.0000000000000808157 |
| Sapria himalayana | scaffold14_12630789 | 6 | CH_shi_589 | 3 | 20 | 0.00091941 |
| Vigna mungo | CM024069.1 | 6 | CH_vmu_613 | 3 | 4 | 0.000771909 |
| Vitis vinifera | chr13_random | 6 | CH_vvi_128 | 6 | 7 | 0.00000000000210182 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |