Functional clusters
Information
- Type InterPro
- Description Solute-binding protein family 3/N-terminal domain of MltF
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group26 | 5 | CH_ach_110 | 3 | 3 | 0.000000154921 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 5 | CH_arhy_1044 | 3 | 6 | 0.000208683 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_335 | 3 | 5 | 0.0000119257 |
| Brassica carinata | ChrB03 | 5 | CH_bca_1253 | 3 | 4 | 0.0000537173 |
| Brassica napus | A09 | 5 | CH_bna_1166 | 3 | 5 | 0.000195292 |
| Brassica napus | C02 | 5 | CH_bna_863 | 3 | 3 | 0.0000195457 |
| Brassica napus | C04 | 5 | CH_bna_99 | 6 | 7 | 0.0000000000000213256 |
| Capsicum annuum | PGAv.1.6.scaffold790 | 5 | CH_can_462 | 3 | 5 | 0.0000168816 |
| Corylus avellana | 2 | 5 | CH_cav_148 | 6 | 16 | 0.000000000524003 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_303 | 4 | 6 | 0.000000148506 |
| Ceratophyllum demersum | 12 | 5 | CH_cde_167 | 3 | 5 | 0.0000340347 |
| Ceratophyllum demersum | 12 | 5 | CH_cde_168 | 3 | 5 | 0.0000340347 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1759 | 5 | CH_cqu_596 | 3 | 4 | 0.0000238476 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_153 | 4 | 4 | 0.0000000260916 |
| Davidia involucrata | GWHABJS00000013 | 5 | CH_din_91 | 6 | 8 | 0.00000000000014501 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_466 | 7 | 25 | 0.000000000093934 |
| Erythranthe guttata | scaffold_10 | 5 | CH_egut_616 | 3 | 4 | 0.000226932 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_32 | 10 | 14 | 1.92857e-22 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_1214 | 3 | 6 | 0.000987893 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_188 | 7 | 19 | 0.00000000000175169 |
| Helianthus annuus | HanXRQChr12 | 5 | CH_han_527 | 4 | 6 | 0.00000070196 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_178 | 5 | 5 | 0.0000000000344536 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 5 | CH_lsa_721 | 3 | 4 | 0.000156508 |
| Malus domestica | Chr05 | 5 | CH_mdo_591 | 4 | 8 | 0.00000127879 |
| Medicago truncatula | chr2 | 5 | CH_mtr_213 | 5 | 5 | 0.000000000000132268 |
| Olea europaea | chr7 | 5 | CH_oeu_256 | 3 | 3 | 0.0000140019 |
| Olea europaea | chr21 | 5 | CH_oeu_396 | 3 | 5 | 0.000139871 |
| Oryza sativa ssp. japonica | chr06 | 5 | CH_osa_90 | 6 | 13 | 0.000000000000158321 |
| Quercus lobata | CM012294 | 5 | CH_qlo_67 | 12 | 21 | 1.68902e-28 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_306 | 7 | 22 | 0.0000000000205328 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_96 | 7 | 10 | 2.34147e-18 |
| Salix brachista | GWHAAZH00000013 | 5 | CH_sbr_486 | 3 | 5 | 0.0000791468 |
| Simmondsia chinensis | GWHAASQ00000021 | 5 | CH_sci_247 | 3 | 7 | 0.0000456237 |
| Sechium edule | LG10 | 5 | CH_sed_348 | 3 | 4 | 0.0000892664 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_2347 | 3 | 3 | 0.000303725 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_392 | 8 | 16 | 0.0000000000000838592 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_457 | 3 | 3 | 0.0000162854 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_260 | 5 | CH_tpr_91 | 5 | 7 | 0.0000000000442785 |
| Vanilla planifolia | CM028157.1 | 5 | CH_vpl_125 | 4 | 9 | 0.0000000502627 |
| Vitis vinifera | chr10 | 5 | CH_vvi_644 | 3 | 5 | 0.000283887 |
| Actinidia chinensis | Lachesis_group26 | 6 | CH_ach_110 | 3 | 3 | 0.000000154921 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 6 | CH_arhy_1044 | 3 | 6 | 0.000208683 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_335 | 3 | 5 | 0.0000119257 |
| Brassica carinata | ChrB03 | 6 | CH_bca_1253 | 3 | 4 | 0.0000537173 |
| Brassica napus | A09 | 6 | CH_bna_1166 | 3 | 5 | 0.000195292 |
| Brassica napus | C02 | 6 | CH_bna_863 | 3 | 3 | 0.0000195457 |
| Brassica napus | C04 | 6 | CH_bna_99 | 6 | 7 | 0.0000000000000213256 |
| Capsicum annuum | PGAv.1.6.scaffold790 | 6 | CH_can_462 | 3 | 5 | 0.0000168816 |
| Corylus avellana | 2 | 6 | CH_cav_148 | 6 | 16 | 0.000000000524003 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_303 | 4 | 6 | 0.000000148506 |
| Ceratophyllum demersum | 12 | 6 | CH_cde_167 | 3 | 5 | 0.0000340347 |
| Ceratophyllum demersum | 12 | 6 | CH_cde_168 | 3 | 5 | 0.0000340347 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1759 | 6 | CH_cqu_596 | 3 | 4 | 0.0000238476 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_153 | 4 | 4 | 0.0000000260916 |
| Davidia involucrata | GWHABJS00000013 | 6 | CH_din_91 | 6 | 8 | 0.00000000000014501 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_466 | 7 | 25 | 0.000000000093934 |
| Erythranthe guttata | scaffold_10 | 6 | CH_egut_616 | 3 | 4 | 0.000226932 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_32 | 10 | 14 | 1.92857e-22 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_1214 | 3 | 6 | 0.000987893 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_188 | 7 | 19 | 0.00000000000175169 |
| Helianthus annuus | HanXRQChr12 | 6 | CH_han_527 | 4 | 6 | 0.00000070196 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_178 | 5 | 5 | 0.0000000000344536 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 6 | CH_lsa_721 | 3 | 4 | 0.000156508 |
| Malus domestica | Chr05 | 6 | CH_mdo_591 | 4 | 8 | 0.00000127879 |
| Medicago truncatula | chr2 | 6 | CH_mtr_213 | 5 | 5 | 0.000000000000132268 |
| Olea europaea | chr7 | 6 | CH_oeu_256 | 3 | 3 | 0.0000140019 |
| Olea europaea | chr21 | 6 | CH_oeu_396 | 3 | 5 | 0.000139871 |
| Oryza sativa ssp. japonica | chr06 | 6 | CH_osa_90 | 6 | 13 | 0.000000000000158321 |
| Quercus lobata | CM012294 | 6 | CH_qlo_67 | 12 | 21 | 1.68902e-28 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_306 | 7 | 22 | 0.0000000000205328 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_96 | 7 | 10 | 2.34147e-18 |
| Salix brachista | GWHAAZH00000013 | 6 | CH_sbr_486 | 3 | 5 | 0.0000791468 |
| Simmondsia chinensis | GWHAASQ00000021 | 6 | CH_sci_247 | 3 | 7 | 0.0000456237 |
| Sechium edule | LG10 | 6 | CH_sed_348 | 3 | 4 | 0.0000892664 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_2347 | 3 | 3 | 0.000303725 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_392 | 8 | 16 | 0.0000000000000838592 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_457 | 3 | 3 | 0.0000162854 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_260 | 6 | CH_tpr_91 | 5 | 7 | 0.0000000000442785 |
| Vanilla planifolia | CM028157.1 | 6 | CH_vpl_125 | 4 | 9 | 0.0000000502627 |
| Vitis vinifera | chr10 | 6 | CH_vvi_644 | 3 | 5 | 0.000283887 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |