Functional clusters
Information
- Type InterPro
- Description Phosphoglycerate kinase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_152 | 4 | 10 | 0.00000000110332 |
| Actinidia chinensis | Lachesis_group9 | 5 | CH_ach_590 | 2 | 2 | 0.000814819 |
| Actinidia chinensis | Lachesis_group9 | 5 | CH_ach_591 | 2 | 2 | 0.000814819 |
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_549 | 2 | 2 | 0.000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 5 | CH_arhy_1149 | 2 | 2 | 0.000449075 |
| Brassica carinata | ChrB02 | 5 | CH_bca_2128 | 2 | 2 | 0.000961939 |
| Brassica oleracea | C6 | 5 | CH_bol_844 | 2 | 2 | 0.000686409 |
| Brassica rapa | A07 | 5 | CH_bra_606 | 2 | 2 | 0.000901558 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_1419 | 2 | 2 | 0.000687821 |
| Capsicum annuum | PGAv.1.6.scaffold943 | 5 | CH_can_677 | 2 | 2 | 0.000247831 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_403 | 2 | 2 | 0.000778301 |
| Corylus avellana | 4 | 5 | CH_cav_772 | 2 | 3 | 0.000689981 |
| Coffea canephora | chr5 | 5 | CH_ccan_144 | 3 | 9 | 0.0000000228536 |
| Citrus clementina | scaffold_9 | 5 | CH_ccl_636 | 2 | 2 | 0.000246093 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_478 | 2 | 2 | 0.000227204 |
| Carya illinoinensis | Chr11 | 5 | CH_cil_742 | 2 | 2 | 0.000371897 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1477 | 5 | CH_cqu_991 | 2 | 2 | 0.000710732 |
| Davidia involucrata | GWHABJS00000013 | 5 | CH_din_641 | 2 | 2 | 0.000300075 |
| Durio zibethinus | NW_019167860.1 | 5 | CH_dzi_276 | 3 | 6 | 0.00000225505 |
| Durio zibethinus | NW_019167993.1 | 5 | CH_dzi_624 | 2 | 2 | 0.000973326 |
| Erythranthe guttata | scaffold_8 | 5 | CH_egut_583 | 2 | 2 | 0.000218444 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_782 | 2 | 2 | 0.000589102 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_783 | 2 | 2 | 0.000589102 |
| Gossypium hirsutum | A01 | 5 | CH_ghi_1334 | 2 | 2 | 0.000961256 |
| Gossypium hirsutum | D01 | 5 | CH_ghi_1335 | 2 | 2 | 0.000961256 |
| Glycine max | Gm15 | 5 | CH_gma_868 | 2 | 2 | 0.000569336 |
| Glycine max | Gm08 | 5 | CH_gma_869 | 2 | 2 | 0.000569336 |
| Gossypium raimondii | Chr02 | 5 | CH_gra_499 | 2 | 2 | 0.000160832 |
| Lupinus albus | Lalb_Chr25 | 5 | CH_lal_596 | 2 | 2 | 0.000314895 |
| Lotus japonicus | chr3 | 5 | CH_lja_466 | 2 | 2 | 0.000214523 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_903 | 2 | 2 | 0.000179662 |
| Malus domestica | Chr10 | 5 | CH_mdo_1220 | 2 | 2 | 0.000379212 |
| Manihot esculenta | Chromosome06 | 5 | CH_mes_677 | 2 | 2 | 0.000610631 |
| Manihot esculenta | Chromosome14 | 5 | CH_mes_678 | 2 | 2 | 0.000610631 |
| Medicago truncatula | chr2 | 5 | CH_mtr_507 | 3 | 4 | 0.0000000405134 |
| Olea europaea | chr19 | 5 | CH_oeu_709 | 2 | 3 | 0.00096076 |
| Petunia axillaris | Peaxi162Scf00452 | 5 | CH_pax_531 | 2 | 2 | 0.000211067 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_493 | 2 | 2 | 0.000225107 |
| Prunus persica | Pp04 | 5 | CH_ppe_680 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_614 | 2 | 2 | 0.000312981 |
| Papaver somniferum | NW_020648748.1 | 5 | CH_pso_521 | 3 | 3 | 0.000000346422 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_740 | 2 | 2 | 0.000578001 |
| Populus trichocarpa | Chr08 | 5 | CH_ptr_741 | 2 | 2 | 0.000578001 |
| Phaseolus vulgaris | Chr05 | 5 | CH_pvu_534 | 2 | 2 | 0.000220418 |
| Quercus lobata | 4 | 5 | CH_qlo_1691 | 2 | 2 | 0.000516289 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1228 | 2 | 2 | 0.000239192 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_957 | 2 | 2 | 0.000645307 |
| Striga asiatica | scaffold186 | 5 | CH_sas_232 | 2 | 2 | 0.000625371 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_563 | 2 | 2 | 0.000136494 |
| Salix brachista | GWHAAZH00000008 | 5 | CH_sbr_279 | 3 | 4 | 0.000000476457 |
| Salix brachista | GWHAAZH00000010 | 5 | CH_sbr_692 | 2 | 2 | 0.000945209 |
| Simmondsia chinensis | GWHAASQ00000020 | 5 | CH_sci_446 | 2 | 2 | 0.000510856 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_697 | 2 | 2 | 0.000176082 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_638 | 2 | 2 | 0.000133437 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_696 | 2 | 2 | 0.000153736 |
| Theobroma cacao | Chromosome_7 | 5 | CH_tca_607 | 2 | 2 | 0.000219716 |
| Tarenaya hassleriana | NW_010965869.1 | 5 | CH_tha_297 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_474 | 2 | 2 | 0.0000756974 |
| Tripterygium wilfordii | NC_052252.1 | 5 | CH_twi_452 | 2 | 2 | 0.000334504 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_784 | 2 | 2 | 0.000929238 |
| Vitis vinifera | chr19 | 5 | CH_vvi_594 | 2 | 2 | 0.000228189 |
| Acer truncatum | chr1 | 6 | CH_acertr_152 | 4 | 10 | 0.00000000110332 |
| Actinidia chinensis | Lachesis_group9 | 6 | CH_ach_590 | 2 | 2 | 0.000814819 |
| Actinidia chinensis | Lachesis_group9 | 6 | CH_ach_591 | 2 | 2 | 0.000814819 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_549 | 2 | 2 | 0.000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 6 | CH_arhy_1149 | 2 | 2 | 0.000449075 |
| Brassica carinata | ChrB02 | 6 | CH_bca_2128 | 2 | 2 | 0.000961939 |
| Brassica oleracea | C6 | 6 | CH_bol_844 | 2 | 2 | 0.000686409 |
| Brassica rapa | A07 | 6 | CH_bra_606 | 2 | 2 | 0.000901558 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_1419 | 2 | 2 | 0.000687821 |
| Capsicum annuum | PGAv.1.6.scaffold943 | 6 | CH_can_677 | 2 | 2 | 0.000247831 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_403 | 2 | 2 | 0.000778301 |
| Corylus avellana | 4 | 6 | CH_cav_772 | 2 | 3 | 0.000689981 |
| Coffea canephora | chr5 | 6 | CH_ccan_144 | 3 | 9 | 0.0000000228536 |
| Citrus clementina | scaffold_9 | 6 | CH_ccl_636 | 2 | 2 | 0.000246093 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_478 | 2 | 2 | 0.000227204 |
| Carya illinoinensis | Chr11 | 6 | CH_cil_742 | 2 | 2 | 0.000371897 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1477 | 6 | CH_cqu_991 | 2 | 2 | 0.000710732 |
| Davidia involucrata | GWHABJS00000013 | 6 | CH_din_641 | 2 | 2 | 0.000300075 |
| Durio zibethinus | NW_019167860.1 | 6 | CH_dzi_276 | 3 | 6 | 0.00000225505 |
| Durio zibethinus | NW_019167993.1 | 6 | CH_dzi_624 | 2 | 2 | 0.000973326 |
| Erythranthe guttata | scaffold_8 | 6 | CH_egut_583 | 2 | 2 | 0.000218444 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_782 | 2 | 2 | 0.000589102 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_783 | 2 | 2 | 0.000589102 |
| Gossypium hirsutum | A01 | 6 | CH_ghi_1334 | 2 | 2 | 0.000961256 |
| Gossypium hirsutum | D01 | 6 | CH_ghi_1335 | 2 | 2 | 0.000961256 |
| Glycine max | Gm15 | 6 | CH_gma_868 | 2 | 2 | 0.000569336 |
| Glycine max | Gm08 | 6 | CH_gma_869 | 2 | 2 | 0.000569336 |
| Gossypium raimondii | Chr02 | 6 | CH_gra_499 | 2 | 2 | 0.000160832 |
| Lupinus albus | Lalb_Chr25 | 6 | CH_lal_596 | 2 | 2 | 0.000314895 |
| Lotus japonicus | chr3 | 6 | CH_lja_466 | 2 | 2 | 0.000214523 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_903 | 2 | 2 | 0.000179662 |
| Malus domestica | Chr10 | 6 | CH_mdo_1220 | 2 | 2 | 0.000379212 |
| Manihot esculenta | Chromosome06 | 6 | CH_mes_677 | 2 | 2 | 0.000610631 |
| Manihot esculenta | Chromosome14 | 6 | CH_mes_678 | 2 | 2 | 0.000610631 |
| Medicago truncatula | chr2 | 6 | CH_mtr_507 | 3 | 4 | 0.0000000405134 |
| Olea europaea | chr19 | 6 | CH_oeu_709 | 2 | 3 | 0.00096076 |
| Petunia axillaris | Peaxi162Scf00452 | 6 | CH_pax_531 | 2 | 2 | 0.000211067 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_493 | 2 | 2 | 0.000225107 |
| Prunus persica | Pp04 | 6 | CH_ppe_680 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_614 | 2 | 2 | 0.000312981 |
| Papaver somniferum | NW_020648748.1 | 6 | CH_pso_521 | 3 | 3 | 0.000000346422 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_740 | 2 | 2 | 0.000578001 |
| Populus trichocarpa | Chr08 | 6 | CH_ptr_741 | 2 | 2 | 0.000578001 |
| Phaseolus vulgaris | Chr05 | 6 | CH_pvu_534 | 2 | 2 | 0.000220418 |
| Quercus lobata | 4 | 6 | CH_qlo_1691 | 2 | 2 | 0.000516289 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1228 | 2 | 2 | 0.000239192 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_957 | 2 | 2 | 0.000645307 |
| Striga asiatica | scaffold186 | 6 | CH_sas_232 | 2 | 2 | 0.000625371 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_563 | 2 | 2 | 0.000136494 |
| Salix brachista | GWHAAZH00000008 | 6 | CH_sbr_279 | 3 | 4 | 0.000000476457 |
| Salix brachista | GWHAAZH00000010 | 6 | CH_sbr_692 | 2 | 2 | 0.000945209 |
| Simmondsia chinensis | GWHAASQ00000020 | 6 | CH_sci_446 | 2 | 2 | 0.000510856 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_697 | 2 | 2 | 0.000176082 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_638 | 2 | 2 | 0.000133437 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_696 | 2 | 2 | 0.000153736 |
| Theobroma cacao | Chromosome_7 | 6 | CH_tca_607 | 2 | 2 | 0.000219716 |
| Tarenaya hassleriana | NW_010965869.1 | 6 | CH_tha_297 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_474 | 2 | 2 | 0.0000756974 |
| Tripterygium wilfordii | NC_052252.1 | 6 | CH_twi_452 | 2 | 2 | 0.000334504 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_784 | 2 | 2 | 0.000929238 |
| Vitis vinifera | chr19 | 6 | CH_vvi_594 | 2 | 2 | 0.000228189 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |