Functional clusters
Information
- Type InterPro
- Description Glycoside hydrolase, family 5
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 5 | CH_acertr_395 | 3 | 3 | 0.00000271362 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1405 | 3 | 6 | 0.000115546 |
| Brassica carinata | ChrB08 | 5 | CH_bca_75 | 7 | 16 | 0.00000000000000108206 |
| Brassica napus | C09 | 5 | CH_bna_497 | 4 | 9 | 0.000000270189 |
| Brassica oleracea | C1 | 5 | CH_bol_620 | 3 | 7 | 0.0000992335 |
| Brassica rapa | A01 | 5 | CH_bra_247 | 3 | 3 | 0.00000315177 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_332 | 3 | 3 | 0.00000118251 |
| Citrullus lanatus | CG_Chr01 | 5 | CH_cla_31 | 5 | 5 | 0.00000000000287506 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1214 | 5 | CH_cqu_478 | 3 | 3 | 0.00000274803 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_276 | 3 | 3 | 0.0000119162 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_1113 | 3 | 11 | 0.000567831 |
| Medicago truncatula | chr7 | 5 | CH_mtr_571 | 4 | 6 | 0.000000144603 |
| Nelumbo nucifera | chr4 | 5 | CH_nnu_132 | 4 | 5 | 0.00000000398903 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_327 | 3 | 3 | 0.00000152291 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_298 | 3 | 3 | 0.00000241551 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_38 | 9 | 15 | 2.65062e-22 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_921 | 3 | 5 | 0.0000938948 |
| Quercus lobata | 3 | 5 | CH_qlo_435 | 5 | 6 | 0.00000000000650479 |
| Sechium edule | LG01 | 5 | CH_sed_108 | 4 | 4 | 0.00000000333368 |
| Vitis vinifera | chr19 | 5 | CH_vvi_534 | 3 | 4 | 0.0000797909 |
| Acer truncatum | chr9 | 6 | CH_acertr_395 | 3 | 3 | 0.00000271362 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1405 | 3 | 6 | 0.000115546 |
| Brassica carinata | ChrB08 | 6 | CH_bca_75 | 7 | 16 | 0.00000000000000108206 |
| Brassica napus | C09 | 6 | CH_bna_497 | 4 | 9 | 0.000000270189 |
| Brassica oleracea | C1 | 6 | CH_bol_620 | 3 | 7 | 0.0000992335 |
| Brassica rapa | A01 | 6 | CH_bra_247 | 3 | 3 | 0.00000315177 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_332 | 3 | 3 | 0.00000118251 |
| Citrullus lanatus | CG_Chr01 | 6 | CH_cla_31 | 5 | 5 | 0.00000000000287506 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1214 | 6 | CH_cqu_478 | 3 | 3 | 0.00000274803 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_276 | 3 | 3 | 0.0000119162 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_1113 | 3 | 11 | 0.000567831 |
| Medicago truncatula | chr7 | 6 | CH_mtr_571 | 4 | 6 | 0.000000144603 |
| Nelumbo nucifera | chr4 | 6 | CH_nnu_132 | 4 | 5 | 0.00000000398903 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_327 | 3 | 3 | 0.00000152291 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_298 | 3 | 3 | 0.00000241551 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_38 | 9 | 15 | 2.65062e-22 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_921 | 3 | 5 | 0.0000938948 |
| Quercus lobata | 3 | 6 | CH_qlo_435 | 5 | 6 | 0.00000000000650479 |
| Sechium edule | LG01 | 6 | CH_sed_108 | 4 | 4 | 0.00000000333368 |
| Vitis vinifera | chr19 | 6 | CH_vvi_534 | 3 | 4 | 0.0000797909 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |