Functional clusters
Information
- Type InterPro
- Description Decaprenyl diphosphate synthase-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 5 | CH_aar_159 | 3 | 3 | 0.000000249713 |
| Acer truncatum | chr3 | 5 | CH_acertr_455 | 3 | 6 | 0.0000125171 |
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_254 | 3 | 3 | 0.000000365965 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 5 | CH_amhyb_373 | 2 | 2 | 0.000505051 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_87 | 4 | 4 | 0.00000000000888889 |
| Amborella trichopoda | AmTr_v1.0_scaffold00029 | 5 | CH_atr_566 | 2 | 2 | 0.000476644 |
| Brassica carinata | ChrC04 | 5 | CH_bca_463 | 4 | 9 | 0.0000000326681 |
| Brassica carinata | ChrC04 | 5 | CH_bca_772 | 3 | 3 | 0.00000121391 |
| Brassica carinata | ChrB06 | 5 | CH_bca_957 | 3 | 4 | 0.00000485479 |
| Brassica napus | C09 | 5 | CH_bna_154 | 5 | 8 | 0.00000000000327801 |
| Brassica oleracea | C9 | 5 | CH_bol_74 | 5 | 8 | 0.000000000000959467 |
| Brassica rapa | A02 | 5 | CH_bra_188 | 3 | 3 | 0.000000456177 |
| Carpinus fangiana | scaffold9 | 5 | CH_cfa_604 | 2 | 2 | 0.000757346 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_73 | 5 | 5 | 0.00000000000000359581 |
| Corchorus olitorius | AWUE01017496.1 | 5 | CH_col_103 | 3 | 6 | 0.0000255722 |
| Carica papaya | supercontig_6 | 5 | CH_cpa_652 | 2 | 2 | 0.000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3973 | 5 | CH_cqu_271 | 4 | 5 | 0.0000000201778 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1251 | 5 | CH_cqu_334 | 4 | 7 | 0.000000141125 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1695 | 5 | CH_cqu_86 | 7 | 14 | 0.00000000000000146659 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_134 | 4 | 4 | 0.000000000147763 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_874 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_1275 | 2 | 2 | 0.000351165 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_177 | 3 | 3 | 0.000000173971 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_781 | 2 | 2 | 0.000589102 |
| Glycine max | Gm14 | 5 | CH_gma_866 | 2 | 2 | 0.000569336 |
| Hydrangea macrophylla | Hma1.2p1_0300F.1 | 5 | CH_hma_144 | 3 | 3 | 0.000000185113 |
| Lotus japonicus | Contig00155 | 5 | CH_lja_465 | 2 | 2 | 0.000214523 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_503 | 3 | 3 | 0.00000064559 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_470 | 3 | 5 | 0.0000033281 |
| Magnolia biondii | Chr08 | 5 | CH_mbi_152 | 4 | 4 | 0.00000000000515518 |
| Malus domestica | Chr03 | 5 | CH_mdo_1394 | 2 | 2 | 0.000796344 |
| Malus domestica | Chr02 | 5 | CH_mdo_506 | 3 | 4 | 0.000000301966 |
| Manihot esculenta | Chromosome14 | 5 | CH_mes_176 | 4 | 4 | 0.0000000000478185 |
| Petunia axillaris | Peaxi162Scf00003 | 5 | CH_pax_587 | 3 | 10 | 0.000323592 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_251 | 3 | 3 | 0.000000472967 |
| Papaver somniferum | NW_020628818.1 | 5 | CH_pso_153 | 5 | 5 | 0.0000000000000650218 |
| Papaver somniferum | NW_020622381.1 | 5 | CH_pso_591 | 3 | 3 | 0.00000134838 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_41 | 10 | 39 | 1.12727e-23 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_2418 | 2 | 2 | 0.000487151 |
| Solanum lycopersicum | SL4.0ch08 | 5 | CH_sly_422 | 3 | 5 | 0.00000289307 |
| Selaginella moellendorffii | scaffold_3 | 5 | CH_smo_126 | 3 | 3 | 0.00000215783 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_108 | 3 | 3 | 0.0000000929892 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_898 | 2 | 2 | 0.00093406 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_899 | 2 | 2 | 0.00093406 |
| Solanum tuberosum | ST4.03ch10 | 5 | CH_stu_431 | 3 | 3 | 0.00000179234 |
| Solanum tuberosum | ST4.03ch06 | 5 | CH_stu_462 | 4 | 22 | 0.00000401328 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_192 | 4 | 4 | 0.000000000247519 |
| Tarenaya hassleriana | NW_010968505.1 | 5 | CH_tha_239 | 2 | 2 | 0.000209541 |
| Aethionema arabicum | LG-11 | 6 | CH_aar_159 | 3 | 3 | 0.000000249713 |
| Acer truncatum | chr3 | 6 | CH_acertr_455 | 3 | 6 | 0.0000125171 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_254 | 3 | 3 | 0.000000365965 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 6 | CH_amhyb_373 | 2 | 2 | 0.000505051 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_87 | 4 | 4 | 0.00000000000888889 |
| Amborella trichopoda | AmTr_v1.0_scaffold00029 | 6 | CH_atr_566 | 2 | 2 | 0.000476644 |
| Brassica carinata | ChrC04 | 6 | CH_bca_463 | 4 | 9 | 0.0000000326681 |
| Brassica carinata | ChrC04 | 6 | CH_bca_772 | 3 | 3 | 0.00000121391 |
| Brassica carinata | ChrB06 | 6 | CH_bca_957 | 3 | 4 | 0.00000485479 |
| Brassica napus | C09 | 6 | CH_bna_154 | 5 | 8 | 0.00000000000327801 |
| Brassica oleracea | C9 | 6 | CH_bol_74 | 5 | 8 | 0.000000000000959467 |
| Brassica rapa | A02 | 6 | CH_bra_188 | 3 | 3 | 0.000000456177 |
| Carpinus fangiana | scaffold9 | 6 | CH_cfa_604 | 2 | 2 | 0.000757346 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_73 | 5 | 5 | 0.00000000000000359581 |
| Corchorus olitorius | AWUE01017496.1 | 6 | CH_col_103 | 3 | 6 | 0.0000255722 |
| Carica papaya | supercontig_6 | 6 | CH_cpa_652 | 2 | 2 | 0.000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3973 | 6 | CH_cqu_271 | 4 | 5 | 0.0000000201778 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1251 | 6 | CH_cqu_334 | 4 | 7 | 0.000000141125 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1695 | 6 | CH_cqu_86 | 7 | 14 | 0.00000000000000146659 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_134 | 4 | 4 | 0.000000000147763 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_874 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_1275 | 2 | 2 | 0.000351165 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_177 | 3 | 3 | 0.000000173971 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_781 | 2 | 2 | 0.000589102 |
| Glycine max | Gm14 | 6 | CH_gma_866 | 2 | 2 | 0.000569336 |
| Hydrangea macrophylla | Hma1.2p1_0300F.1 | 6 | CH_hma_144 | 3 | 3 | 0.000000185113 |
| Lotus japonicus | Contig00155 | 6 | CH_lja_465 | 2 | 2 | 0.000214523 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_503 | 3 | 3 | 0.00000064559 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_470 | 3 | 5 | 0.0000033281 |
| Magnolia biondii | Chr08 | 6 | CH_mbi_152 | 4 | 4 | 0.00000000000515518 |
| Malus domestica | Chr03 | 6 | CH_mdo_1394 | 2 | 2 | 0.000796344 |
| Malus domestica | Chr02 | 6 | CH_mdo_506 | 3 | 4 | 0.000000301966 |
| Manihot esculenta | Chromosome14 | 6 | CH_mes_176 | 4 | 4 | 0.0000000000478185 |
| Petunia axillaris | Peaxi162Scf00003 | 6 | CH_pax_587 | 3 | 10 | 0.000323592 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_251 | 3 | 3 | 0.000000472967 |
| Papaver somniferum | NW_020628818.1 | 6 | CH_pso_153 | 5 | 5 | 0.0000000000000650218 |
| Papaver somniferum | NW_020622381.1 | 6 | CH_pso_591 | 3 | 3 | 0.00000134838 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_41 | 10 | 39 | 1.12727e-23 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_2418 | 2 | 2 | 0.000487151 |
| Solanum lycopersicum | SL4.0ch08 | 6 | CH_sly_422 | 3 | 5 | 0.00000289307 |
| Selaginella moellendorffii | scaffold_3 | 6 | CH_smo_126 | 3 | 3 | 0.00000215783 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_108 | 3 | 3 | 0.0000000929892 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_898 | 2 | 2 | 0.00093406 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_899 | 2 | 2 | 0.00093406 |
| Solanum tuberosum | ST4.03ch10 | 6 | CH_stu_431 | 3 | 3 | 0.00000179234 |
| Solanum tuberosum | ST4.03ch06 | 6 | CH_stu_462 | 4 | 22 | 0.00000401328 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_192 | 4 | 4 | 0.000000000247519 |
| Tarenaya hassleriana | NW_010968505.1 | 6 | CH_tha_239 | 2 | 2 | 0.000209541 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |