Functional clusters
Information
- Type InterPro
- Description Glycoside hydrolase, family 32
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 5 | CH_atr_629 | 2 | 2 | 0.000794407 |
| Camellia sinensis var. sinensis | Chr15 | 5 | CH_camsi_273 | 4 | 4 | 0.000000000143189 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_710 | 3 | 4 | 0.00000277508 |
| Cannabis sativa | NC_044370.1 | 5 | CH_cansat_184 | 4 | 11 | 0.0000000587901 |
| Corylus avellana | 11 | 5 | CH_cav_172 | 4 | 7 | 0.00000000331127 |
| Coffea canephora | chr6 | 5 | CH_ccan_208 | 3 | 10 | 0.000000538652 |
| Coffea canephora | chr8 | 5 | CH_ccan_348 | 3 | 37 | 0.000029368 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_184 | 4 | 4 | 0.000000000115933 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2493 | 5 | CH_cqu_115 | 5 | 5 | 0.000000000000165145 |
| Erythranthe guttata | scaffold_10 | 5 | CH_egut_313 | 3 | 3 | 0.000000445382 |
| Glycine max | Gm20 | 5 | CH_gma_589 | 3 | 6 | 0.0000665009 |
| Lotus japonicus | chr1 | 5 | CH_lja_355 | 3 | 5 | 0.0000279015 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_166 | 5 | 7 | 0.0000000000170359 |
| Petunia axillaris | Peaxi162Scf00096 | 5 | CH_pax_503 | 3 | 9 | 0.000136992 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_221 | 3 | 3 | 0.000000168917 |
| Prunus persica | Pp07 | 5 | CH_ppe_198 | 4 | 4 | 0.0000000000871804 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_150 | 6 | 12 | 0.0000000000000454054 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_166 | 5 | 5 | 0.000000000000189912 |
| Papaver somniferum | NC_039364.1 | 5 | CH_pso_174 | 6 | 15 | 0.000000000000245781 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_193 | 6 | 19 | 0.00000000000133118 |
| Quercus lobata | CM012294 | 5 | CH_qlo_954 | 3 | 3 | 0.00000114355 |
| Quercus lobata | 7 | 5 | CH_qlo_955 | 3 | 3 | 0.00000114355 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_580 | 3 | 3 | 0.000000133499 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_621 | 3 | 29 | 0.00043413 |
| Simmondsia chinensis | GWHAASQ00000015 | 5 | CH_sci_514 | 2 | 2 | 0.000851426 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_411 | 3 | 4 | 0.00000386126 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_494 | 3 | 7 | 0.0000337628 |
| Utricularia gibba | unitig_32 | 5 | CH_ugi_38 | 4 | 9 | 0.0000000262829 |
| Vigna mungo | CM024073.1 | 5 | CH_vmu_215 | 3 | 3 | 0.00000137779 |
| Zea mays | 2 | 5 | CH_zma_243 | 3 | 4 | 0.00000345042 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 6 | CH_atr_629 | 2 | 2 | 0.000794407 |
| Camellia sinensis var. sinensis | Chr15 | 6 | CH_camsi_273 | 4 | 4 | 0.000000000143189 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_710 | 3 | 4 | 0.00000277508 |
| Cannabis sativa | NC_044370.1 | 6 | CH_cansat_184 | 4 | 11 | 0.0000000587901 |
| Corylus avellana | 11 | 6 | CH_cav_172 | 4 | 7 | 0.00000000331127 |
| Coffea canephora | chr6 | 6 | CH_ccan_208 | 3 | 10 | 0.000000538652 |
| Coffea canephora | chr8 | 6 | CH_ccan_348 | 3 | 37 | 0.000029368 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_184 | 4 | 4 | 0.000000000115933 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2493 | 6 | CH_cqu_115 | 5 | 5 | 0.000000000000165145 |
| Erythranthe guttata | scaffold_10 | 6 | CH_egut_313 | 3 | 3 | 0.000000445382 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_450 | 3 | 4 | 0.00000115031 |
| Glycine max | Gm20 | 6 | CH_gma_589 | 3 | 6 | 0.0000665009 |
| Lotus japonicus | chr1 | 6 | CH_lja_355 | 3 | 5 | 0.0000279015 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_166 | 5 | 7 | 0.0000000000170359 |
| Petunia axillaris | Peaxi162Scf00096 | 6 | CH_pax_503 | 3 | 9 | 0.000136992 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_221 | 3 | 3 | 0.000000168917 |
| Prunus persica | Pp07 | 6 | CH_ppe_198 | 4 | 4 | 0.0000000000871804 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_150 | 6 | 12 | 0.0000000000000454054 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_166 | 5 | 5 | 0.000000000000189912 |
| Papaver somniferum | NC_039364.1 | 6 | CH_pso_174 | 6 | 15 | 0.000000000000245781 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_193 | 6 | 19 | 0.00000000000133118 |
| Quercus lobata | CM012294 | 6 | CH_qlo_954 | 3 | 3 | 0.00000114355 |
| Quercus lobata | 7 | 6 | CH_qlo_955 | 3 | 3 | 0.00000114355 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_580 | 3 | 3 | 0.000000133499 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_621 | 3 | 29 | 0.00043413 |
| Simmondsia chinensis | GWHAASQ00000015 | 6 | CH_sci_514 | 2 | 2 | 0.000851426 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_411 | 3 | 4 | 0.00000386126 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_494 | 3 | 7 | 0.0000337628 |
| Utricularia gibba | unitig_32 | 6 | CH_ugi_38 | 4 | 9 | 0.0000000262829 |
| Vigna mungo | CM024073.1 | 6 | CH_vmu_215 | 3 | 3 | 0.00000137779 |
| Zea mays | 2 | 6 | CH_zma_243 | 3 | 4 | 0.00000345042 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |