Functional clusters

Information

  • Type InterPro
  • Description Chlorophyll A-B binding protein, plant and chromista

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_362 5 CH_aag_55 6 17 0.000000000436601
Anthoceros agrestis Sc2ySwM_368 5 CH_aag_99 4 5 0.000000184037
Arabidopsis thaliana Chr1 5 CH_ath_281 3 3 0.00000189602
Amborella trichopoda AmTr_v1.0_scaffold00045 5 CH_atr_151 4 4 0.00000000900258
Brassica napus A05 5 CH_bna_1100 3 4 0.000133939
Brassica rapa A05 5 CH_bra_365 3 4 0.0000789165
Camellia sinensis var. sinensis Chr7 5 CH_camsi_126 6 7 0.0000000000000094497
Camellia sinensis var. sinensis Chr8 5 CH_camsi_535 4 7 0.000000177447
Capsicum annuum PGAv.1.6.scaffold257 5 CH_can_41 9 10 9.61174e-23
Corylus avellana 2 5 CH_cav_344 3 3 0.00000401203
Chara braunii BFEA01000226 5 CH_cbr_73 4 7 0.0000000710371
Chara braunii BFEA01000209 5 CH_cbr_8 8 22 1.28683e-17
Coffea canephora chr9 5 CH_ccan_284 3 14 0.0000112864
Citrus clementina scaffold_2 5 CH_ccl_426 3 3 0.00000686396
Ceratophyllum demersum 6 5 CH_cde_82 4 4 0.000000109109
Ceratophyllum demersum 1 5 CH_cde_9 7 8 0.00000000000000192873
Carpinus fangiana Cfa01 5 CH_cfa_102 5 5 0.00000000000286974
Cardamine hirsuta Chr5 5 CH_chi_200 4 4 0.00000000877353
Chlamydomonas reinhardtii chromosome_6 5 CH_cre_100 5 49 0.0000773834
Capsella rubella scaffold_1 5 CH_cru_367 3 3 0.0000106654
Daucus carota DCARv2_Chr1 5 CH_dca_210 4 6 0.000000123924
Daucus carota DCARv2_Chr8 5 CH_dca_345 3 3 0.0000123496
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_105 5 6 0.0000000000216585
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_309 4 8 0.000000449826
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_445 3 3 0.0000110363
Eucalyptus grandis Chr04 5 CH_egr_577 4 4 0.0000000044
Erythranthe guttata scaffold_13 5 CH_egut_268 4 4 0.0000000682303
Erythranthe guttata scaffold_13 5 CH_egut_76 7 7 9.80316e-17
Eutrema salsugineum scaffold_5 5 CH_esa_303 3 4 0.0000396445
Fragaria vesca Fvb6 5 CH_fve_341 4 7 0.00000022778
Fragaria vesca Fvb6 5 CH_fve_526 3 4 0.0000421251
Helianthus annuus HanXRQChr15 5 CH_han_668 3 3 0.00000733807
Lupinus albus Lalb_Chr12 5 CH_lal_147 4 4 0.0000000155961
Lupinus albus Lalb_Chr01 5 CH_lal_359 3 3 0.0000204933
Lonicera japonica GWHAAZE00000002 5 CH_lonja_169 6 6 0.0000000000000157112
Lactuca sativa Lsat_1_v8_lg_9 5 CH_lsa_274 4 4 0.0000000111658
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_327 4 5 0.0000000557978
Micromonas commoda Chr_02 5 CH_mco_6 3 3 0.0000781889
Manihot esculenta Chromosome17 5 CH_mes_462 3 4 0.0000344382
Marchantia polymorpha scaffold_199 5 CH_mpo_5 9 9 2.17051e-22
Medicago truncatula chr6 5 CH_mtr_275 5 6 0.0000000000103495
Medicago truncatula chr5 5 CH_mtr_524 4 6 0.0000000547346
Nicotiana tabacum Nitab4.5_0000982 5 CH_nta_165 3 3 0.0000319862
Nicotiana tabacum Nitab4.5_0000592 5 CH_nta_23 6 7 0.000000000000252822
Olea europaea chr16 5 CH_oeu_95 4 4 0.0000000048488
Petunia axillaris Peaxi162Scf00603 5 CH_pax_49 6 7 0.000000000000440448
Petunia axillaris Peaxi162Scf00242 5 CH_pax_511 3 4 0.000194219
Prasinoderma coloniale Chr17 5 CH_pco_8 3 3 0.000474576
Physcomitrium patens Chr02 5 CH_ppa_23 7 25 0.000000000754027
Physcomitrium patens Chr10 5 CH_ppa_26 5 6 0.00000000345977
Physcomitrium patens Chr05 5 CH_ppa_389 3 4 0.00076983
Prunus persica Pp03 5 CH_ppe_470 3 3 0.00000808845
Pisum sativum chr7LG7 5 CH_psa_76 6 13 0.000000000000807344
Papaver somniferum NC_039359.1 5 CH_pso_1279 3 6 0.000945369
Papaver somniferum NC_039359.1 5 CH_pso_1280 3 6 0.000945369
Papaver somniferum NC_039362.1 5 CH_pso_231 7 28 0.0000000000195957
Papaver somniferum NC_039366.1 5 CH_pso_551 6 55 0.00000062409
Papaver somniferum NC_039358.1 5 CH_pso_639 5 28 0.00000281023
Papaver somniferum NW_020628818.1 5 CH_pso_902 5 52 0.0000731652
Phaseolus vulgaris Chr04 5 CH_pvu_30 11 16 6.5965e-26
Quercus lobata 5 5 CH_qlo_1030 3 3 0.00000387447
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_216 7 19 0.0000000000000852054
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_365 5 8 0.000000000294761
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_885 3 3 0.0000142653
Salvia bowleyana GWHASIU00000005 5 CH_sbo_432 3 4 0.0000141551
Salvia bowleyana GWHASIU00000004 5 CH_sbo_620 4 46 0.000220482
Sechium edule LG10 5 CH_sed_285 3 3 0.0000250115
Solanum lycopersicum SL4.0ch03 5 CH_sly_516 3 3 0.0000209806
Solanum lycopersicum SL4.0ch02 5 CH_sly_53 8 8 4.42701e-21
Solanum pennellii Spenn-ch02 5 CH_spe_17 9 9 8.38019e-25
Solanum pennellii Spenn-ch03 5 CH_spe_257 4 5 0.0000000539869
Solanum tuberosum ST4.03ch02 5 CH_stu_173 7 25 0.00000000000854368
Solanum tuberosum ST4.03ch03 5 CH_stu_31 10 12 5.38702e-25
Trochodendron aralioides group3 5 CH_tar_251 4 5 0.000000102073
Trifolium pratense Tp57577_TGAC_v2_LG1 5 CH_tpr_150 4 4 0.00000000778891
Utricularia gibba unitig_26 5 CH_ugi_15 6 8 0.00000000000138902
Zea mays 2 5 CH_zma_501 3 7 0.000615596
Anthoceros agrestis Sc2ySwM_362 6 CH_aag_55 6 17 0.000000000436601
Anthoceros agrestis Sc2ySwM_368 6 CH_aag_99 4 5 0.000000184037
Arabidopsis thaliana Chr1 6 CH_ath_281 3 3 0.00000189602
Amborella trichopoda AmTr_v1.0_scaffold00045 6 CH_atr_151 4 4 0.00000000900258
Brassica napus A05 6 CH_bna_1100 3 4 0.000133939
Brassica rapa A05 6 CH_bra_365 3 4 0.0000789165
Camellia sinensis var. sinensis Chr7 6 CH_camsi_126 6 7 0.0000000000000094497
Camellia sinensis var. sinensis Chr8 6 CH_camsi_535 4 7 0.000000177447
Capsicum annuum PGAv.1.6.scaffold257 6 CH_can_41 9 10 9.61174e-23
Corylus avellana 2 6 CH_cav_344 3 3 0.00000401203
Chara braunii BFEA01000226 6 CH_cbr_73 4 7 0.0000000710371
Chara braunii BFEA01000209 6 CH_cbr_8 8 22 1.28683e-17
Coffea canephora chr9 6 CH_ccan_284 3 14 0.0000112864
Citrus clementina scaffold_2 6 CH_ccl_426 3 3 0.00000686396
Ceratophyllum demersum 6 6 CH_cde_82 4 4 0.000000109109
Ceratophyllum demersum 1 6 CH_cde_9 7 8 0.00000000000000192873
Carpinus fangiana Cfa01 6 CH_cfa_102 5 5 0.00000000000286974
Cardamine hirsuta Chr5 6 CH_chi_200 4 4 0.00000000877353
Chlamydomonas reinhardtii chromosome_6 6 CH_cre_100 5 49 0.0000773834
Capsella rubella scaffold_1 6 CH_cru_367 3 3 0.0000106654
Daucus carota DCARv2_Chr1 6 CH_dca_210 4 6 0.000000123924
Daucus carota DCARv2_Chr8 6 CH_dca_345 3 3 0.0000123496
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_105 5 6 0.0000000000216585
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_309 4 8 0.000000449826
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_445 3 3 0.0000110363
Eucalyptus grandis Chr04 6 CH_egr_577 4 4 0.0000000044
Erythranthe guttata scaffold_13 6 CH_egut_268 4 4 0.0000000682303
Erythranthe guttata scaffold_13 6 CH_egut_76 7 7 9.80316e-17
Eutrema salsugineum scaffold_5 6 CH_esa_303 3 4 0.0000396445
Fragaria x ananassa Fvb6-2 6 CH_fan_487 4 8 0.0000019945
Fragaria x ananassa Fvb6-4 6 CH_fan_746 3 3 0.0000406134
Fragaria x ananassa Fvb6-3 6 CH_fan_767 4 16 0.0000516235
Fragaria vesca Fvb6 6 CH_fve_341 4 7 0.00000022778
Fragaria vesca Fvb6 6 CH_fve_526 3 4 0.0000421251
Helianthus annuus HanXRQChr15 6 CH_han_668 3 3 0.00000733807
Lupinus albus Lalb_Chr12 6 CH_lal_147 4 4 0.0000000155961
Lupinus albus Lalb_Chr01 6 CH_lal_359 3 3 0.0000204933
Lonicera japonica GWHAAZE00000002 6 CH_lonja_169 6 6 0.0000000000000157112
Lactuca sativa Lsat_1_v8_lg_9 6 CH_lsa_274 4 4 0.0000000111658
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_327 4 5 0.0000000557978
Micromonas commoda Chr_02 6 CH_mco_6 3 3 0.0000781889
Manihot esculenta Chromosome17 6 CH_mes_462 3 4 0.0000344382
Marchantia polymorpha scaffold_199 6 CH_mpo_5 9 9 2.17051e-22
Medicago truncatula chr6 6 CH_mtr_275 5 6 0.0000000000103495
Medicago truncatula chr5 6 CH_mtr_524 4 6 0.0000000547346
Nicotiana tabacum Nitab4.5_0000982 6 CH_nta_165 3 3 0.0000319862
Nicotiana tabacum Nitab4.5_0000592 6 CH_nta_23 6 7 0.000000000000252822
Olea europaea chr16 6 CH_oeu_95 4 4 0.0000000048488
Petunia axillaris Peaxi162Scf00603 6 CH_pax_49 6 7 0.000000000000440448
Petunia axillaris Peaxi162Scf00242 6 CH_pax_511 3 4 0.000194219
Prasinoderma coloniale Chr17 6 CH_pco_8 3 3 0.000474576
Physcomitrium patens Chr02 6 CH_ppa_23 7 25 0.000000000754027
Physcomitrium patens Chr10 6 CH_ppa_26 5 6 0.00000000345977
Physcomitrium patens Chr05 6 CH_ppa_389 3 4 0.00076983
Prunus persica Pp03 6 CH_ppe_470 3 3 0.00000808845
Pisum sativum chr7LG7 6 CH_psa_76 6 13 0.000000000000807344
Papaver somniferum NC_039359.1 6 CH_pso_1279 3 6 0.000945369
Papaver somniferum NC_039359.1 6 CH_pso_1280 3 6 0.000945369
Papaver somniferum NC_039362.1 6 CH_pso_231 7 28 0.0000000000195957
Papaver somniferum NC_039366.1 6 CH_pso_551 6 55 0.00000062409
Papaver somniferum NC_039358.1 6 CH_pso_639 5 28 0.00000281023
Papaver somniferum NW_020628818.1 6 CH_pso_902 5 52 0.0000731652
Phaseolus vulgaris Chr04 6 CH_pvu_30 11 16 6.5965e-26
Quercus lobata 5 6 CH_qlo_1030 3 3 0.00000387447
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_216 7 19 0.0000000000000852054
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_365 5 8 0.000000000294761
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_885 3 3 0.0000142653
Salvia bowleyana GWHASIU00000005 6 CH_sbo_432 3 4 0.0000141551
Salvia bowleyana GWHASIU00000004 6 CH_sbo_620 4 46 0.000220482
Sechium edule LG10 6 CH_sed_285 3 3 0.0000250115
Solanum lycopersicum SL4.0ch03 6 CH_sly_516 3 3 0.0000209806
Solanum lycopersicum SL4.0ch02 6 CH_sly_53 8 8 4.42701e-21
Solanum pennellii Spenn-ch02 6 CH_spe_17 9 9 8.38019e-25
Solanum pennellii Spenn-ch03 6 CH_spe_257 4 5 0.0000000539869
Solanum tuberosum ST4.03ch02 6 CH_stu_173 7 25 0.00000000000854368
Solanum tuberosum ST4.03ch03 6 CH_stu_31 10 12 5.38702e-25
Trochodendron aralioides group3 6 CH_tar_251 4 5 0.000000102073
Trifolium pratense Tp57577_TGAC_v2_LG1 6 CH_tpr_150 4 4 0.00000000778891
Utricularia gibba unitig_26 6 CH_ugi_15 6 8 0.00000000000138902
Zea mays 2 6 CH_zma_501 3 7 0.000615596

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001