Functional clusters
Information
- Type InterPro
- Description Ionotropic glutamate receptor
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_223 | 4 | 6 | 0.0000000945687 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 5 | CH_atr_313 | 3 | 3 | 0.0000107919 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1101 | 3 | 3 | 0.000016057 |
| Brassica oleracea | C2 | 5 | CH_bol_410 | 3 | 3 | 0.00000585591 |
| Brassica oleracea | C4 | 5 | CH_bol_411 | 3 | 3 | 0.00000585591 |
| Camellia sinensis var. sinensis | Chr15 | 5 | CH_camsi_235 | 5 | 6 | 0.0000000000236185 |
| Corylus avellana | 7 | 5 | CH_cav_108 | 7 | 17 | 0.00000000000573668 |
| Ceratophyllum demersum | 12 | 5 | CH_cde_263 | 3 | 6 | 0.000104665 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_306 | 4 | 8 | 0.000000414258 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_397 | 3 | 3 | 0.00000953171 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_771 | 5 | 65 | 0.000435336 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_96 | 5 | 5 | 0.000000000029407 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_202 | 4 | 5 | 0.000000106577 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_462 | 3 | 4 | 0.0000990221 |
| Davidia involucrata | GWHABJS00000020 | 5 | CH_din_67 | 7 | 10 | 0.00000000000000151993 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_51 | 7 | 14 | 0.0000000000000277306 |
| Erythranthe guttata | scaffold_9 | 5 | CH_egut_14 | 15 | 17 | 5.15047e-38 |
| Gossypium hirsutum | A07 | 5 | CH_ghi_421 | 4 | 5 | 0.0000000289082 |
| Glycine max | Gm16 | 5 | CH_gma_496 | 3 | 3 | 0.0000117904 |
| Gossypium raimondii | Chr01 | 5 | CH_gra_207 | 4 | 4 | 0.00000000691117 |
| Gossypium raimondii | Chr03 | 5 | CH_gra_208 | 4 | 4 | 0.00000000691117 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_60 | 11 | 44 | 1.60864e-19 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_28 | 11 | 31 | 1.1942e-24 |
| Malus domestica | Chr08 | 5 | CH_mdo_30 | 10 | 15 | 8.54352e-24 |
| Malus domestica | Chr15 | 5 | CH_mdo_512 | 4 | 6 | 0.000000332722 |
| Nelumbo nucifera | chr8 | 5 | CH_nnu_77 | 6 | 14 | 0.00000000000829147 |
| Olea europaea | chr2 | 5 | CH_oeu_258 | 3 | 3 | 0.0000173527 |
| Prunus persica | Pp02 | 5 | CH_ppe_118 | 7 | 8 | 0.00000000000000202269 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_136 | 7 | 21 | 0.00000000000000802117 |
| Populus trichocarpa | Chr11 | 5 | CH_ptr_367 | 4 | 5 | 0.000000666399 |
| Populus trichocarpa | Chr18 | 5 | CH_ptr_38 | 11 | 16 | 2.63643e-24 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_81 | 8 | 11 | 5.99779e-17 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_345 | 3 | 3 | 0.00000453468 |
| Quercus lobata | 5 | 5 | CH_qlo_795 | 4 | 5 | 0.000000108022 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_1033 | 4 | 11 | 0.0000570825 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1364 | 3 | 4 | 0.000521447 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_69 | 9 | 26 | 1.05811e-19 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_130 | 5 | 6 | 0.0000000000301468 |
| Salix brachista | GWHAAZH00000014 | 5 | CH_sbr_391 | 3 | 3 | 0.0000120556 |
| Simmondsia chinensis | GWHAASQ00000023 | 5 | CH_sci_236 | 3 | 5 | 0.0000239078 |
| Sechium edule | LG12 | 5 | CH_sed_350 | 3 | 4 | 0.0000999757 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_10 | 22 | 27 | 3.61079e-51 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_96 | 13 | 17 | 7.71936e-28 |
| Trochodendron aralioides | group10 | 5 | CH_tar_289 | 4 | 5 | 0.000000239418 |
| Vitis vinifera | chr4 | 5 | CH_vvi_14 | 15 | 25 | 4.38216e-36 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_223 | 4 | 6 | 0.0000000945687 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 6 | CH_atr_313 | 3 | 3 | 0.0000107919 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1101 | 3 | 3 | 0.000016057 |
| Brassica oleracea | C2 | 6 | CH_bol_410 | 3 | 3 | 0.00000585591 |
| Brassica oleracea | C4 | 6 | CH_bol_411 | 3 | 3 | 0.00000585591 |
| Camellia sinensis var. sinensis | Chr15 | 6 | CH_camsi_235 | 5 | 6 | 0.0000000000236185 |
| Corylus avellana | 7 | 6 | CH_cav_108 | 7 | 17 | 0.00000000000573668 |
| Ceratophyllum demersum | 12 | 6 | CH_cde_263 | 3 | 6 | 0.000104665 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_306 | 4 | 8 | 0.000000414258 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_397 | 3 | 3 | 0.00000953171 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_771 | 5 | 65 | 0.000435336 |
| Cucumis melo | chr02 | 6 | CH_cme_397 | 3 | 6 | 0.000346507 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_96 | 5 | 5 | 0.000000000029407 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_202 | 4 | 5 | 0.000000106577 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_462 | 3 | 4 | 0.0000990221 |
| Davidia involucrata | GWHABJS00000020 | 6 | CH_din_67 | 7 | 10 | 0.00000000000000151993 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_51 | 7 | 14 | 0.0000000000000277306 |
| Erythranthe guttata | scaffold_9 | 6 | CH_egut_14 | 15 | 17 | 5.15047e-38 |
| Gossypium hirsutum | A07 | 6 | CH_ghi_421 | 4 | 5 | 0.0000000289082 |
| Glycine max | Gm16 | 6 | CH_gma_496 | 3 | 3 | 0.0000117904 |
| Gossypium raimondii | Chr01 | 6 | CH_gra_207 | 4 | 4 | 0.00000000691117 |
| Gossypium raimondii | Chr03 | 6 | CH_gra_208 | 4 | 4 | 0.00000000691117 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_60 | 11 | 44 | 1.60864e-19 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_28 | 11 | 31 | 1.1942e-24 |
| Malus domestica | Chr08 | 6 | CH_mdo_30 | 10 | 15 | 8.54352e-24 |
| Malus domestica | Chr15 | 6 | CH_mdo_512 | 4 | 6 | 0.000000332722 |
| Nelumbo nucifera | chr8 | 6 | CH_nnu_77 | 6 | 14 | 0.00000000000829147 |
| Olea europaea | chr2 | 6 | CH_oeu_258 | 3 | 3 | 0.0000173527 |
| Prunus persica | Pp02 | 6 | CH_ppe_118 | 7 | 8 | 0.00000000000000202269 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_136 | 7 | 21 | 0.00000000000000802117 |
| Populus trichocarpa | Chr11 | 6 | CH_ptr_367 | 4 | 5 | 0.000000666399 |
| Populus trichocarpa | Chr18 | 6 | CH_ptr_38 | 11 | 16 | 2.63643e-24 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_81 | 8 | 11 | 5.99779e-17 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_345 | 3 | 3 | 0.00000453468 |
| Quercus lobata | 5 | 6 | CH_qlo_795 | 4 | 5 | 0.000000108022 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_1033 | 4 | 11 | 0.0000570825 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1364 | 3 | 4 | 0.000521447 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_69 | 9 | 26 | 1.05811e-19 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_130 | 5 | 6 | 0.0000000000301468 |
| Salix brachista | GWHAAZH00000014 | 6 | CH_sbr_391 | 3 | 3 | 0.0000120556 |
| Simmondsia chinensis | GWHAASQ00000023 | 6 | CH_sci_236 | 3 | 5 | 0.0000239078 |
| Sechium edule | LG12 | 6 | CH_sed_350 | 3 | 4 | 0.0000999757 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_10 | 22 | 27 | 3.61079e-51 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_96 | 13 | 17 | 7.71936e-28 |
| Trochodendron aralioides | group10 | 6 | CH_tar_289 | 4 | 5 | 0.000000239418 |
| Vitis vinifera | chr4 | 6 | CH_vvi_14 | 15 | 25 | 4.38216e-36 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |