Functional clusters
Information
- Type InterPro
- Description Pumilio RNA-binding repeat
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB08 | 5 | CH_bca_262 | 5 | 7 | 0.000000000369193 |
| Brassica carinata | ChrC01 | 5 | CH_bca_450 | 4 | 4 | 0.0000000253341 |
| Brassica napus | A10 | 5 | CH_bna_163 | 8 | 51 | 0.00000000000586757 |
| Brassica napus | C03 | 5 | CH_bna_495 | 6 | 49 | 0.000000254785 |
| Brassica napus | C09 | 5 | CH_bna_644 | 6 | 68 | 0.00000197081 |
| Brassica napus | A03 | 5 | CH_bna_968 | 3 | 3 | 0.0000474848 |
| Brassica oleracea | C3 | 5 | CH_bol_396 | 5 | 42 | 0.00000411957 |
| Brassica oleracea | C9 | 5 | CH_bol_461 | 3 | 3 | 0.0000146462 |
| Brassica rapa | A10 | 5 | CH_bra_179 | 4 | 6 | 0.000000292526 |
| Brassica rapa | A03 | 5 | CH_bra_226 | 5 | 29 | 0.00000171609 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_1454 | 4 | 52 | 0.000816721 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_357 | 5 | 60 | 0.0000871773 |
| Lupinus albus | Lalb_Chr11 | 5 | CH_lal_353 | 3 | 3 | 0.0000135355 |
| Nicotiana tabacum | Nitab4.5_0000004 | 5 | CH_nta_312 | 2 | 2 | 0.000658364 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_633 | 3 | 8 | 0.000063593 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_523 | 3 | 8 | 0.0000365299 |
| Tarenaya hassleriana | NW_010966092.1 | 5 | CH_tha_37 | 5 | 5 | 0.00000000000948602 |
| Brassica carinata | ChrB08 | 6 | CH_bca_262 | 5 | 7 | 0.000000000369193 |
| Brassica carinata | ChrC01 | 6 | CH_bca_450 | 4 | 4 | 0.0000000253341 |
| Brassica napus | A10 | 6 | CH_bna_163 | 8 | 51 | 0.00000000000586757 |
| Brassica napus | C03 | 6 | CH_bna_495 | 6 | 49 | 0.000000254785 |
| Brassica napus | C09 | 6 | CH_bna_644 | 6 | 68 | 0.00000197081 |
| Brassica napus | A03 | 6 | CH_bna_968 | 3 | 3 | 0.0000474848 |
| Brassica oleracea | C3 | 6 | CH_bol_396 | 5 | 42 | 0.00000411957 |
| Brassica oleracea | C9 | 6 | CH_bol_461 | 3 | 3 | 0.0000146462 |
| Brassica rapa | A10 | 6 | CH_bra_179 | 4 | 6 | 0.000000292526 |
| Brassica rapa | A03 | 6 | CH_bra_226 | 5 | 29 | 0.00000171609 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_1454 | 4 | 52 | 0.000816721 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_357 | 5 | 60 | 0.0000871773 |
| Lupinus albus | Lalb_Chr11 | 6 | CH_lal_353 | 3 | 3 | 0.0000135355 |
| Nicotiana tabacum | Nitab4.5_0000004 | 6 | CH_nta_312 | 2 | 2 | 0.000658364 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_633 | 3 | 8 | 0.000063593 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_523 | 3 | 8 | 0.0000365299 |
| Tarenaya hassleriana | NW_010966092.1 | 6 | CH_tha_37 | 5 | 5 | 0.00000000000948602 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |