Functional clusters

Information

  • Type InterPro
  • Description Lipoxygenase, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-7 5 CH_aar_433 2 2 0.000912326
Actinidia chinensis Lachesis_group0 5 CH_ach_192 3 4 0.00000389434
Avicennia marina ScioBoG_94932_HRSCAF_95134 5 CH_ama_70 3 3 0.00000184004
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 5 CH_amhyb_58 4 4 0.000000000590528
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 5 CH_arhy_1221 3 7 0.000539232
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_248 3 3 0.00000226207
Camellia sinensis var. sinensis Chr11 5 CH_camsi_272 4 4 0.000000000143189
Cicer arietinum L. Ca_LG7_v3 5 CH_car_171 3 4 0.0000247046
Citrullus lanatus CG_Chr02 5 CH_cla_8 8 9 9.26887e-21
Chenopodium quinoa C_Quinoa_Scaffold_3107 5 CH_cqu_237 4 4 0.0000000033913
Chenopodium quinoa C_Quinoa_Scaffold_2088 5 CH_cqu_268 4 5 0.0000000169497
Chenopodium quinoa C_Quinoa_Scaffold_2088 5 CH_cqu_293 4 6 0.0000000508285
Chenopodium quinoa C_Quinoa_Scaffold_3820 5 CH_cqu_524 3 3 0.00000681618
Davidia involucrata GWHABJS00000007 5 CH_din_233 4 5 0.0000000384029
Davidia involucrata GWHABJS00000007 5 CH_din_234 4 5 0.0000000384029
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_365 3 3 0.00000205383
Eucalyptus grandis Chr10 5 CH_egr_243 7 14 2.10937e-16
Erythranthe guttata scaffold_4 5 CH_egut_71 6 6 2.12851e-17
Fragaria vesca Fvb7 5 CH_fve_375 4 14 0.000000612981
Gossypium hirsutum A08 5 CH_ghi_800 3 5 0.000043396
Gossypium raimondii Chr04 5 CH_gra_235 4 7 0.0000000494622
Lupinus albus Lalb_Chr24 5 CH_lal_314 3 3 0.00000471015
Lotus japonicus chr3 5 CH_lja_9 10 10 1.134e-27
Oryza sativa ssp. japonica chr03 5 CH_osa_556 3 12 0.000151624
Punica granatum NC_045132.1 5 CH_pgr_327 3 4 0.00000557279
Physcomitrium patens Chr15 5 CH_ppa_20 4 4 0.000000000341638
Pisum sativum chr4LG4 5 CH_psa_755 3 15 0.000842362
Populus trichocarpa Chr05 5 CH_ptr_258 4 5 0.0000000112237
Phaseolus vulgaris Chr10 5 CH_pvu_18 13 15 8.15659e-34
Rhododendron simsii chr07 5 CH_rsi_459 3 3 0.000000524708
Solanum pennellii Spenn-ch01 5 CH_spe_208 4 5 0.00000000639362
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_21 8 13 1.17303e-18
Tripterygium wilfordii NC_052235.1 5 CH_twi_266 3 4 0.00000533245
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_72 5 5 0.00000000000111984
Vitis vinifera chr6 5 CH_vvi_172 5 11 0.000000000347637
Aethionema arabicum LG-7 6 CH_aar_433 2 2 0.000912326
Actinidia chinensis Lachesis_group0 6 CH_ach_192 3 4 0.00000389434
Avicennia marina ScioBoG_94932_HRSCAF_95134 6 CH_ama_70 3 3 0.00000184004
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 6 CH_amhyb_58 4 4 0.000000000590528
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 6 CH_arhy_1221 3 7 0.000539232
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_248 3 3 0.00000226207
Camellia sinensis var. sinensis Chr11 6 CH_camsi_272 4 4 0.000000000143189
Cicer arietinum L. Ca_LG7_v3 6 CH_car_171 3 4 0.0000247046
Citrullus lanatus CG_Chr02 6 CH_cla_8 8 9 9.26887e-21
Cucumis melo chr05 6 CH_cme_10 11 12 6.31572e-30
Chenopodium quinoa C_Quinoa_Scaffold_3107 6 CH_cqu_237 4 4 0.0000000033913
Chenopodium quinoa C_Quinoa_Scaffold_2088 6 CH_cqu_268 4 5 0.0000000169497
Chenopodium quinoa C_Quinoa_Scaffold_2088 6 CH_cqu_293 4 6 0.0000000508285
Chenopodium quinoa C_Quinoa_Scaffold_3820 6 CH_cqu_524 3 3 0.00000681618
Davidia involucrata GWHABJS00000007 6 CH_din_233 4 5 0.0000000384029
Davidia involucrata GWHABJS00000007 6 CH_din_234 4 5 0.0000000384029
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_365 3 3 0.00000205383
Eucalyptus grandis Chr10 6 CH_egr_243 7 14 2.10937e-16
Erythranthe guttata scaffold_4 6 CH_egut_71 6 6 2.12851e-17
Fragaria vesca Fvb7 6 CH_fve_375 4 14 0.000000612981
Gossypium hirsutum A08 6 CH_ghi_800 3 5 0.000043396
Gossypium raimondii Chr04 6 CH_gra_235 4 7 0.0000000494622
Lupinus albus Lalb_Chr24 6 CH_lal_314 3 3 0.00000471015
Lotus japonicus chr3 6 CH_lja_9 10 10 1.134e-27
Oryza sativa ssp. japonica chr03 6 CH_osa_556 3 12 0.000151624
Punica granatum NC_045132.1 6 CH_pgr_327 3 4 0.00000557279
Physcomitrium patens Chr15 6 CH_ppa_20 4 4 0.000000000341638
Pisum sativum chr4LG4 6 CH_psa_755 3 15 0.000842362
Populus trichocarpa Chr05 6 CH_ptr_258 4 5 0.0000000112237
Phaseolus vulgaris Chr10 6 CH_pvu_18 13 15 8.15659e-34
Rhododendron simsii chr07 6 CH_rsi_459 3 3 0.000000524708
Solanum pennellii Spenn-ch01 6 CH_spe_208 4 5 0.00000000639362
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_21 8 13 1.17303e-18
Tripterygium wilfordii NC_052235.1 6 CH_twi_266 3 4 0.00000533245
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_72 5 5 0.00000000000111984
Vitis vinifera chr6 6 CH_vvi_172 5 11 0.000000000347637

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001