Functional clusters
Information
- Type InterPro
- Description Lipoxygenase, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-7 | 5 | CH_aar_433 | 2 | 2 | 0.000912326 |
| Actinidia chinensis | Lachesis_group0 | 5 | CH_ach_192 | 3 | 4 | 0.00000389434 |
| Avicennia marina | ScioBoG_94932_HRSCAF_95134 | 5 | CH_ama_70 | 3 | 3 | 0.00000184004 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 5 | CH_amhyb_58 | 4 | 4 | 0.000000000590528 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 5 | CH_arhy_1221 | 3 | 7 | 0.000539232 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_248 | 3 | 3 | 0.00000226207 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_272 | 4 | 4 | 0.000000000143189 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_171 | 3 | 4 | 0.0000247046 |
| Citrullus lanatus | CG_Chr02 | 5 | CH_cla_8 | 8 | 9 | 9.26887e-21 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 5 | CH_cqu_237 | 4 | 4 | 0.0000000033913 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 5 | CH_cqu_268 | 4 | 5 | 0.0000000169497 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 5 | CH_cqu_293 | 4 | 6 | 0.0000000508285 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 5 | CH_cqu_524 | 3 | 3 | 0.00000681618 |
| Davidia involucrata | GWHABJS00000007 | 5 | CH_din_233 | 4 | 5 | 0.0000000384029 |
| Davidia involucrata | GWHABJS00000007 | 5 | CH_din_234 | 4 | 5 | 0.0000000384029 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_365 | 3 | 3 | 0.00000205383 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_243 | 7 | 14 | 2.10937e-16 |
| Erythranthe guttata | scaffold_4 | 5 | CH_egut_71 | 6 | 6 | 2.12851e-17 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_375 | 4 | 14 | 0.000000612981 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_800 | 3 | 5 | 0.000043396 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_235 | 4 | 7 | 0.0000000494622 |
| Lupinus albus | Lalb_Chr24 | 5 | CH_lal_314 | 3 | 3 | 0.00000471015 |
| Lotus japonicus | chr3 | 5 | CH_lja_9 | 10 | 10 | 1.134e-27 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_556 | 3 | 12 | 0.000151624 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_327 | 3 | 4 | 0.00000557279 |
| Physcomitrium patens | Chr15 | 5 | CH_ppa_20 | 4 | 4 | 0.000000000341638 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_755 | 3 | 15 | 0.000842362 |
| Populus trichocarpa | Chr05 | 5 | CH_ptr_258 | 4 | 5 | 0.0000000112237 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_18 | 13 | 15 | 8.15659e-34 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_459 | 3 | 3 | 0.000000524708 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_208 | 4 | 5 | 0.00000000639362 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_21 | 8 | 13 | 1.17303e-18 |
| Tripterygium wilfordii | NC_052235.1 | 5 | CH_twi_266 | 3 | 4 | 0.00000533245 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_72 | 5 | 5 | 0.00000000000111984 |
| Vitis vinifera | chr6 | 5 | CH_vvi_172 | 5 | 11 | 0.000000000347637 |
| Aethionema arabicum | LG-7 | 6 | CH_aar_433 | 2 | 2 | 0.000912326 |
| Actinidia chinensis | Lachesis_group0 | 6 | CH_ach_192 | 3 | 4 | 0.00000389434 |
| Avicennia marina | ScioBoG_94932_HRSCAF_95134 | 6 | CH_ama_70 | 3 | 3 | 0.00000184004 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 6 | CH_amhyb_58 | 4 | 4 | 0.000000000590528 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 6 | CH_arhy_1221 | 3 | 7 | 0.000539232 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_248 | 3 | 3 | 0.00000226207 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_272 | 4 | 4 | 0.000000000143189 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_171 | 3 | 4 | 0.0000247046 |
| Citrullus lanatus | CG_Chr02 | 6 | CH_cla_8 | 8 | 9 | 9.26887e-21 |
| Cucumis melo | chr05 | 6 | CH_cme_10 | 11 | 12 | 6.31572e-30 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 6 | CH_cqu_237 | 4 | 4 | 0.0000000033913 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 6 | CH_cqu_268 | 4 | 5 | 0.0000000169497 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 6 | CH_cqu_293 | 4 | 6 | 0.0000000508285 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 6 | CH_cqu_524 | 3 | 3 | 0.00000681618 |
| Davidia involucrata | GWHABJS00000007 | 6 | CH_din_233 | 4 | 5 | 0.0000000384029 |
| Davidia involucrata | GWHABJS00000007 | 6 | CH_din_234 | 4 | 5 | 0.0000000384029 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_365 | 3 | 3 | 0.00000205383 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_243 | 7 | 14 | 2.10937e-16 |
| Erythranthe guttata | scaffold_4 | 6 | CH_egut_71 | 6 | 6 | 2.12851e-17 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_375 | 4 | 14 | 0.000000612981 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_800 | 3 | 5 | 0.000043396 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_235 | 4 | 7 | 0.0000000494622 |
| Lupinus albus | Lalb_Chr24 | 6 | CH_lal_314 | 3 | 3 | 0.00000471015 |
| Lotus japonicus | chr3 | 6 | CH_lja_9 | 10 | 10 | 1.134e-27 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_556 | 3 | 12 | 0.000151624 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_327 | 3 | 4 | 0.00000557279 |
| Physcomitrium patens | Chr15 | 6 | CH_ppa_20 | 4 | 4 | 0.000000000341638 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_755 | 3 | 15 | 0.000842362 |
| Populus trichocarpa | Chr05 | 6 | CH_ptr_258 | 4 | 5 | 0.0000000112237 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_18 | 13 | 15 | 8.15659e-34 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_459 | 3 | 3 | 0.000000524708 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_208 | 4 | 5 | 0.00000000639362 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_21 | 8 | 13 | 1.17303e-18 |
| Tripterygium wilfordii | NC_052235.1 | 6 | CH_twi_266 | 3 | 4 | 0.00000533245 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_72 | 5 | 5 | 0.00000000000111984 |
| Vitis vinifera | chr6 | 6 | CH_vvi_172 | 5 | 11 | 0.000000000347637 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |