Functional clusters
Information
- Type InterPro
- Description Barwin domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_260 | 2 | 3 | 0.000240761 |
| Actinidia chinensis | Lachesis_group0 | 5 | CH_ach_320 | 2 | 2 | 0.000162964 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_165 | 3 | 3 | 0.00000000653509 |
| Brassica carinata | ChrC01 | 5 | CH_bca_414 | 3 | 3 | 0.0000000137087 |
| Brassica carinata | ChrB04 | 5 | CH_bca_491 | 3 | 4 | 0.0000000548329 |
| Brassica oleracea | C3 | 5 | CH_bol_513 | 2 | 2 | 0.0000326861 |
| Brassica rapa | A03 | 5 | CH_bra_102 | 3 | 3 | 0.00000000276471 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_125 | 6 | 39 | 0.00000000000000944947 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_155 | 3 | 3 | 0.00000000646789 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 5 | CH_can_192 | 4 | 6 | 0.000000000887806 |
| Corylus avellana | 2 | 5 | CH_cav_484 | 2 | 2 | 0.0000766695 |
| Coffea canephora | chr0 | 5 | CH_ccan_489 | 2 | 8 | 0.000127766 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_91 | 5 | 5 | 3.39689e-16 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_461 | 2 | 3 | 0.000227195 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_193 | 3 | 3 | 0.0000000071667 |
| Carya illinoinensis | Chr07 | 5 | CH_cil_261 | 3 | 3 | 0.00000000576299 |
| Citrullus lanatus | CG_Chr02 | 5 | CH_cla_69 | 3 | 3 | 0.0000000118051 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 5 | CH_cqu_818 | 2 | 2 | 0.000284293 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_439 | 2 | 2 | 0.0000731154 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_93 | 4 | 6 | 0.0000000000261767 |
| Durio zibethinus | NW_019168481.1 | 5 | CH_dzi_19 | 8 | 11 | 1.075e-24 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_422 | 4 | 4 | 0.00000000000902255 |
| Eutrema salsugineum | scaffold_13 | 5 | CH_esa_324 | 2 | 2 | 0.0000761499 |
| Gossypium hirsutum | D13 | 5 | CH_ghi_459 | 3 | 3 | 0.0000000898358 |
| Glycine max | Gm19 | 5 | CH_gma_323 | 3 | 3 | 0.0000000756348 |
| Gossypium raimondii | Chr13 | 5 | CH_gra_243 | 3 | 3 | 0.0000000862255 |
| Gossypium raimondii | Chr07 | 5 | CH_gra_314 | 3 | 6 | 0.00000172406 |
| Lotus japonicus | chr1 | 5 | CH_lja_463 | 2 | 2 | 0.000214523 |
| Magnolia biondii | Chr11 | 5 | CH_mbi_58 | 7 | 26 | 6.79674e-19 |
| Malus domestica | Chr12 | 5 | CH_mdo_1213 | 2 | 2 | 0.000379212 |
| Manihot esculenta | Chromosome08 | 5 | CH_mes_151 | 4 | 4 | 0.00000000000341561 |
| Medicago truncatula | chr6 | 5 | CH_mtr_426 | 4 | 10 | 0.00000000550252 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_61 | 4 | 4 | 0.000000000000335304 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_56 | 5 | 5 | 5.83538e-17 |
| Petunia axillaris | Peaxi162Scf00282 | 5 | CH_pax_193 | 3 | 4 | 0.000000118795 |
| Punica granatum | NC_045131.1 | 5 | CH_pgr_487 | 2 | 2 | 0.000225107 |
| Prunus persica | Pp06 | 5 | CH_ppe_675 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_153 | 4 | 13 | 0.00000000456444 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1079 | 2 | 2 | 0.000337941 |
| Papaver somniferum | NW_020624154.1 | 5 | CH_pso_447 | 3 | 4 | 0.0000000609072 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_311 | 3 | 4 | 0.0000000801788 |
| Phaseolus vulgaris | Chr06 | 5 | CH_pvu_525 | 2 | 2 | 0.000220418 |
| Quercus lobata | 3 | 5 | CH_qlo_623 | 3 | 3 | 0.00000000399842 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_125 | 6 | 14 | 6.80343e-18 |
| Salix brachista | GWHAAZH00000013 | 5 | CH_sbr_453 | 2 | 2 | 0.000063014 |
| Simmondsia chinensis | GWHAASQ00000020 | 5 | CH_sci_34 | 5 | 5 | 0.00000000000000236544 |
| Sechium edule | LG08 | 5 | CH_sed_130 | 3 | 3 | 0.0000000305391 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_1222 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_788 | 2 | 4 | 0.000352144 |
| Schrenkiella parvula | ch3-1 | 5 | CH_spa_228 | 2 | 2 | 0.000078734 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_235 | 3 | 5 | 0.0000000296751 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_848 | 2 | 5 | 0.000512413 |
| Selenicereus undatus | Scaffold_33676 | 5 | CH_sun_176 | 2 | 2 | 0.0000726639 |
| Trochodendron aralioides | group17 | 5 | CH_tar_490 | 2 | 2 | 0.0000600366 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_127 | 5 | 10 | 0.00000000000114163 |
| Tarenaya hassleriana | NW_010966542.1 | 5 | CH_tha_291 | 2 | 2 | 0.000419082 |
| Tarenaya hassleriana | NW_010970490.1 | 5 | CH_tha_292 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_83 | 4 | 6 | 0.0000000000195196 |
| Vigna mungo | CM024075.1 | 5 | CH_vmu_425 | 2 | 2 | 0.000193842 |
| Vitis vinifera | chr14 | 5 | CH_vvi_217 | 3 | 3 | 0.0000000086787 |
| Zea mays | 4 | 5 | CH_zma_56 | 4 | 4 | 0.00000000000200532 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_260 | 2 | 3 | 0.000240761 |
| Actinidia chinensis | Lachesis_group0 | 6 | CH_ach_320 | 2 | 2 | 0.000162964 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_165 | 3 | 3 | 0.00000000653509 |
| Brassica carinata | ChrC01 | 6 | CH_bca_414 | 3 | 3 | 0.0000000137087 |
| Brassica carinata | ChrB04 | 6 | CH_bca_491 | 3 | 4 | 0.0000000548329 |
| Brassica oleracea | C3 | 6 | CH_bol_513 | 2 | 2 | 0.0000326861 |
| Brassica rapa | A03 | 6 | CH_bra_102 | 3 | 3 | 0.00000000276471 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_125 | 6 | 39 | 0.00000000000000944947 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_155 | 3 | 3 | 0.00000000646789 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 6 | CH_can_192 | 4 | 6 | 0.000000000887806 |
| Corylus avellana | 2 | 6 | CH_cav_484 | 2 | 2 | 0.0000766695 |
| Coffea canephora | chr0 | 6 | CH_ccan_489 | 2 | 8 | 0.000127766 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_91 | 5 | 5 | 3.39689e-16 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_461 | 2 | 3 | 0.000227195 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_193 | 3 | 3 | 0.0000000071667 |
| Carya illinoinensis | Chr07 | 6 | CH_cil_261 | 3 | 3 | 0.00000000576299 |
| Citrullus lanatus | CG_Chr02 | 6 | CH_cla_69 | 3 | 3 | 0.0000000118051 |
| Cucumis melo | chr05 | 6 | CH_cme_126 | 3 | 3 | 0.00000000667579 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 6 | CH_cqu_818 | 2 | 2 | 0.000284293 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_439 | 2 | 2 | 0.0000731154 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_93 | 4 | 6 | 0.0000000000261767 |
| Durio zibethinus | NW_019168481.1 | 6 | CH_dzi_19 | 8 | 11 | 1.075e-24 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_422 | 4 | 4 | 0.00000000000902255 |
| Eutrema salsugineum | scaffold_13 | 6 | CH_esa_324 | 2 | 2 | 0.0000761499 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_1067 | 2 | 3 | 0.000518101 |
| Gossypium hirsutum | D13 | 6 | CH_ghi_459 | 3 | 3 | 0.0000000898358 |
| Glycine max | Gm19 | 6 | CH_gma_323 | 3 | 3 | 0.0000000756348 |
| Gossypium raimondii | Chr13 | 6 | CH_gra_243 | 3 | 3 | 0.0000000862255 |
| Gossypium raimondii | Chr07 | 6 | CH_gra_314 | 3 | 6 | 0.00000172406 |
| Lotus japonicus | chr1 | 6 | CH_lja_463 | 2 | 2 | 0.000214523 |
| Magnolia biondii | Chr11 | 6 | CH_mbi_58 | 7 | 26 | 6.79674e-19 |
| Malus domestica | Chr12 | 6 | CH_mdo_1213 | 2 | 2 | 0.000379212 |
| Manihot esculenta | Chromosome08 | 6 | CH_mes_151 | 4 | 4 | 0.00000000000341561 |
| Medicago truncatula | chr6 | 6 | CH_mtr_426 | 4 | 10 | 0.00000000550252 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_61 | 4 | 4 | 0.000000000000335304 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_56 | 5 | 5 | 5.83538e-17 |
| Petunia axillaris | Peaxi162Scf00282 | 6 | CH_pax_193 | 3 | 4 | 0.000000118795 |
| Punica granatum | NC_045131.1 | 6 | CH_pgr_487 | 2 | 2 | 0.000225107 |
| Prunus persica | Pp06 | 6 | CH_ppe_675 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_153 | 4 | 13 | 0.00000000456444 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1079 | 2 | 2 | 0.000337941 |
| Papaver somniferum | NW_020624154.1 | 6 | CH_pso_447 | 3 | 4 | 0.0000000609072 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_311 | 3 | 4 | 0.0000000801788 |
| Phaseolus vulgaris | Chr06 | 6 | CH_pvu_525 | 2 | 2 | 0.000220418 |
| Quercus lobata | 3 | 6 | CH_qlo_623 | 3 | 3 | 0.00000000399842 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_125 | 6 | 14 | 6.80343e-18 |
| Salix brachista | GWHAAZH00000013 | 6 | CH_sbr_453 | 2 | 2 | 0.000063014 |
| Simmondsia chinensis | GWHAASQ00000020 | 6 | CH_sci_34 | 5 | 5 | 0.00000000000000236544 |
| Sechium edule | LG08 | 6 | CH_sed_130 | 3 | 3 | 0.0000000305391 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_1222 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_788 | 2 | 4 | 0.000352144 |
| Schrenkiella parvula | ch3-1 | 6 | CH_spa_228 | 2 | 2 | 0.000078734 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_235 | 3 | 5 | 0.0000000296751 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_848 | 2 | 5 | 0.000512413 |
| Selenicereus undatus | Scaffold_33676 | 6 | CH_sun_176 | 2 | 2 | 0.0000726639 |
| Trochodendron aralioides | group17 | 6 | CH_tar_490 | 2 | 2 | 0.0000600366 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_127 | 5 | 10 | 0.00000000000114163 |
| Tarenaya hassleriana | NW_010966542.1 | 6 | CH_tha_291 | 2 | 2 | 0.000419082 |
| Tarenaya hassleriana | NW_010970490.1 | 6 | CH_tha_292 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_83 | 4 | 6 | 0.0000000000195196 |
| Vigna mungo | CM024075.1 | 6 | CH_vmu_425 | 2 | 2 | 0.000193842 |
| Vitis vinifera | chr14 | 6 | CH_vvi_217 | 3 | 3 | 0.0000000086787 |
| Zea mays | 4 | 6 | CH_zma_56 | 4 | 4 | 0.00000000000200532 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |