Functional clusters

Information

  • Type InterPro
  • Description UmuC domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_8 5 CH_aly_520 2 2 0.000198013
Arabidopsis thaliana Chr5 5 CH_ath_419 2 2 0.0000859476
Brassica napus A06 5 CH_bna_1217 2 2 0.000278425
Brassica napus C07 5 CH_bna_1218 2 2 0.000278425
Brassica oleracea C7 5 CH_bol_599 2 2 0.0000980584
Brassica rapa A06 5 CH_bra_392 2 2 0.000128794
Camellia sinensis var. sinensis Chr2 5 CH_camsi_538 4 17 0.000000226746
Camellia sinensis var. sinensis Chr8 5 CH_camsi_852 3 7 0.000018203
Capsicum annuum PGAv.1.6.scaffold606 5 CH_can_646 3 53 0.00023932
Coffea canephora chr2 5 CH_ccan_599 2 7 0.000383294
Capsella rubella scaffold_8 5 CH_cru_529 2 2 0.000219346
Eutrema salsugineum scaffold_20 5 CH_esa_402 2 2 0.00022845
Hydrangea macrophylla Hma1.2p1_0088F.1 5 CH_hma_308 2 2 0.000111086
Pisum sativum chr7LG7 5 CH_psa_611 2 2 0.000312981
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_917 3 10 0.0000240113
Simmondsia chinensis GWHAASQ00000014 5 CH_sci_156 3 4 0.000000434928
Sapria himalayana scaffold54_3822261 5 CH_shi_474 2 2 0.000343083
Schrenkiella parvula ch2-4 5 CH_spa_284 2 2 0.000236202
Tarenaya hassleriana NW_010965372.1 5 CH_tha_319 2 3 0.000628587
Arabidopsis lyrata scaffold_8 6 CH_aly_520 2 2 0.000198013
Arabidopsis thaliana Chr5 6 CH_ath_419 2 2 0.0000859476
Brassica napus A06 6 CH_bna_1217 2 2 0.000278425
Brassica napus C07 6 CH_bna_1218 2 2 0.000278425
Brassica oleracea C7 6 CH_bol_599 2 2 0.0000980584
Brassica rapa A06 6 CH_bra_392 2 2 0.000128794
Camellia sinensis var. sinensis Chr2 6 CH_camsi_538 4 17 0.000000226746
Camellia sinensis var. sinensis Chr8 6 CH_camsi_852 3 7 0.000018203
Capsicum annuum PGAv.1.6.scaffold606 6 CH_can_646 3 53 0.00023932
Coffea canephora chr2 6 CH_ccan_599 2 7 0.000383294
Capsella rubella scaffold_8 6 CH_cru_529 2 2 0.000219346
Eutrema salsugineum scaffold_20 6 CH_esa_402 2 2 0.00022845
Hydrangea macrophylla Hma1.2p1_0088F.1 6 CH_hma_308 2 2 0.000111086
Pisum sativum chr7LG7 6 CH_psa_611 2 2 0.000312981
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_917 3 10 0.0000240113
Simmondsia chinensis GWHAASQ00000014 6 CH_sci_156 3 4 0.000000434928
Sapria himalayana scaffold54_3822261 6 CH_shi_474 2 2 0.000343083
Schrenkiella parvula ch2-4 6 CH_spa_284 2 2 0.000236202
Tarenaya hassleriana NW_010965372.1 6 CH_tha_319 2 3 0.000628587

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001