Functional clusters
Information
- Type InterPro
- Description Chalcone/stilbene synthase, N-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_116 | 3 | 4 | 0.000000772869 |
| Acer truncatum | chr4 | 5 | CH_acertr_454 | 3 | 6 | 0.0000125171 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_10 | 20 | 29 | 3.04564e-49 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 5 | CH_arhy_3 | 29 | 50 | 1.48538e-70 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 5 | CH_arhy_927 | 3 | 3 | 0.0000871543 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_928 | 3 | 3 | 0.0000871543 |
| Brassica napus | C02 | 5 | CH_bna_713 | 3 | 4 | 0.00000418342 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 5 | CH_bvu_125 | 4 | 5 | 0.00000000421287 |
| Camellia sinensis var. sinensis | Contig790 | 5 | CH_camsi_1538 | 2 | 2 | 0.000962949 |
| Cannabis sativa | NC_044379.1 | 5 | CH_cansat_280 | 3 | 4 | 0.00000217282 |
| Capsicum annuum | PGAv.1.6.scaffold706 | 5 | CH_can_377 | 3 | 3 | 0.00000168913 |
| Cicer arietinum L. | Ca_LG8_v3 | 5 | CH_car_88 | 3 | 3 | 0.000000318032 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_291 | 4 | 7 | 0.0000000790291 |
| Ceratophyllum demersum | 11 | 5 | CH_cde_145 | 3 | 4 | 0.00000449027 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_98 | 5 | 8 | 0.00000000000174053 |
| Corchorus olitorius | AWUE01016403.1 | 5 | CH_col_74 | 3 | 3 | 0.00000128001 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_641 | 2 | 2 | 0.000731154 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_163 | 4 | 6 | 0.0000000013414 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_304 | 6 | 11 | 0.0000000000000122411 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_779 | 2 | 2 | 0.000589102 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_1095 | 3 | 12 | 0.000361674 |
| Gossypium hirsutum | D05 | 5 | CH_ghi_1240 | 3 | 15 | 0.000747552 |
| Glycine max | Gm08 | 5 | CH_gma_15 | 12 | 20 | 4.48505e-33 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_474 | 3 | 13 | 0.000147715 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_181 | 5 | 6 | 0.00000000000116665 |
| Lupinus albus | Lalb_Chr09 | 5 | CH_lal_234 | 3 | 3 | 0.000000495806 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_66 | 7 | 14 | 1.64414e-18 |
| Magnolia biondii | Chr11 | 5 | CH_mbi_269 | 4 | 7 | 0.00000000252497 |
| Malus domestica | Chr15 | 5 | CH_mdo_166 | 5 | 7 | 0.00000000000278959 |
| Manihot esculenta | Chromosome11 | 5 | CH_mes_217 | 4 | 5 | 0.00000000112692 |
| Medicago truncatula | chr5 | 5 | CH_mtr_105 | 7 | 8 | 1.45674e-18 |
| Medicago truncatula | chr7 | 5 | CH_mtr_288 | 5 | 7 | 0.0000000000238313 |
| Medicago truncatula | chr1 | 5 | CH_mtr_795 | 3 | 3 | 0.00000582402 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_394 | 3 | 3 | 0.00000143327 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_26 | 9 | 9 | 2.92929e-26 |
| Quercus lobata | 9 | 5 | CH_qlo_1748 | 3 | 27 | 0.000653016 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_579 | 3 | 3 | 0.000000133499 |
| Simmondsia chinensis | GWHAASQ00000007 | 5 | CH_sci_191 | 3 | 3 | 0.00000239236 |
| Trochodendron aralioides | group17 | 5 | CH_tar_33 | 7 | 9 | 1.51859e-18 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_347 | 3 | 3 | 0.000000450584 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_130 | 5 | 14 | 0.00000000147612 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_467 | 5 | CH_tpr_327 | 3 | 3 | 0.00000391093 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_38 | 5 | 5 | 0.000000000000287761 |
| Vitis vinifera | chr16 | 5 | CH_vvi_3 | 20 | 22 | 1.37159e-58 |
| Zea mays | 3 | 5 | CH_zma_201 | 4 | 12 | 0.000000471394 |
| Zea mays | 4 | 5 | CH_zma_234 | 3 | 3 | 0.00000266676 |
| Zea mays | 4 | 5 | CH_zma_363 | 3 | 7 | 0.000093227 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_116 | 3 | 4 | 0.000000772869 |
| Acer truncatum | chr4 | 6 | CH_acertr_454 | 3 | 6 | 0.0000125171 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_10 | 20 | 29 | 3.04564e-49 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 6 | CH_arhy_3 | 29 | 50 | 1.48538e-70 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 6 | CH_arhy_927 | 3 | 3 | 0.0000871543 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_928 | 3 | 3 | 0.0000871543 |
| Brassica napus | C02 | 6 | CH_bna_713 | 3 | 4 | 0.00000418342 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 6 | CH_bvu_125 | 4 | 5 | 0.00000000421287 |
| Camellia sinensis var. sinensis | Contig790 | 6 | CH_camsi_1538 | 2 | 2 | 0.000962949 |
| Cannabis sativa | NC_044379.1 | 6 | CH_cansat_280 | 3 | 4 | 0.00000217282 |
| Capsicum annuum | PGAv.1.6.scaffold706 | 6 | CH_can_377 | 3 | 3 | 0.00000168913 |
| Cicer arietinum L. | Ca_LG8_v3 | 6 | CH_car_88 | 3 | 3 | 0.000000318032 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_291 | 4 | 7 | 0.0000000790291 |
| Ceratophyllum demersum | 11 | 6 | CH_cde_145 | 3 | 4 | 0.00000449027 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_98 | 5 | 8 | 0.00000000000174053 |
| Corchorus olitorius | AWUE01016403.1 | 6 | CH_col_74 | 3 | 3 | 0.00000128001 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_641 | 2 | 2 | 0.000731154 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_163 | 4 | 6 | 0.0000000013414 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_304 | 6 | 11 | 0.0000000000000122411 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_485 | 3 | 5 | 0.0000019904 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_779 | 2 | 2 | 0.000589102 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_1095 | 3 | 12 | 0.000361674 |
| Gossypium hirsutum | D05 | 6 | CH_ghi_1240 | 3 | 15 | 0.000747552 |
| Glycine max | Gm08 | 6 | CH_gma_15 | 12 | 20 | 4.48505e-33 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_474 | 3 | 13 | 0.000147715 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_181 | 5 | 6 | 0.00000000000116665 |
| Lupinus albus | Lalb_Chr09 | 6 | CH_lal_234 | 3 | 3 | 0.000000495806 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_66 | 7 | 14 | 1.64414e-18 |
| Magnolia biondii | Chr11 | 6 | CH_mbi_269 | 4 | 7 | 0.00000000252497 |
| Malus domestica | Chr15 | 6 | CH_mdo_166 | 5 | 7 | 0.00000000000278959 |
| Manihot esculenta | Chromosome11 | 6 | CH_mes_217 | 4 | 5 | 0.00000000112692 |
| Medicago truncatula | chr5 | 6 | CH_mtr_105 | 7 | 8 | 1.45674e-18 |
| Medicago truncatula | chr7 | 6 | CH_mtr_288 | 5 | 7 | 0.0000000000238313 |
| Medicago truncatula | chr1 | 6 | CH_mtr_795 | 3 | 3 | 0.00000582402 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_394 | 3 | 3 | 0.00000143327 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_26 | 9 | 9 | 2.92929e-26 |
| Quercus lobata | 9 | 6 | CH_qlo_1748 | 3 | 27 | 0.000653016 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_579 | 3 | 3 | 0.000000133499 |
| Simmondsia chinensis | GWHAASQ00000007 | 6 | CH_sci_191 | 3 | 3 | 0.00000239236 |
| Trochodendron aralioides | group17 | 6 | CH_tar_33 | 7 | 9 | 1.51859e-18 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_347 | 3 | 3 | 0.000000450584 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_130 | 5 | 14 | 0.00000000147612 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_467 | 6 | CH_tpr_327 | 3 | 3 | 0.00000391093 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_38 | 5 | 5 | 0.000000000000287761 |
| Vitis vinifera | chr16 | 6 | CH_vvi_3 | 20 | 22 | 1.37159e-58 |
| Zea mays | 3 | 6 | CH_zma_201 | 4 | 12 | 0.000000471394 |
| Zea mays | 4 | 6 | CH_zma_234 | 3 | 3 | 0.00000266676 |
| Zea mays | 4 | 6 | CH_zma_363 | 3 | 7 | 0.000093227 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |