Functional clusters
Information
- Type InterPro
- Description NRAMP family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 5 | CH_acertr_182 | 4 | 5 | 0.00000000525951 |
| Acer truncatum | chr2 | 5 | CH_acertr_98 | 5 | 7 | 0.000000000007785 |
| Amborella trichopoda | AmTr_v1.0_scaffold00203 | 5 | CH_atr_36 | 7 | 9 | 8.55318e-20 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_1026 | 3 | 7 | 0.000125688 |
| Camellia sinensis var. sinensis | Chr15 | 5 | CH_camsi_724 | 3 | 3 | 0.00000359562 |
| Capsicum annuum | PGAv.1.6.scaffold1054 | 5 | CH_can_773 | 2 | 2 | 0.000495663 |
| Cicer arietinum L. | Ca_LG5_v3 | 5 | CH_car_235 | 4 | 47 | 0.0000823452 |
| Coffea canephora | chr10 | 5 | CH_ccan_465 | 3 | 53 | 0.0000934215 |
| Carica papaya | supercontig_64 | 5 | CH_cpa_651 | 2 | 2 | 0.000950661 |
| Durio zibethinus | NW_019167826.1 | 5 | CH_dzi_95 | 4 | 4 | 0.0000000000627319 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_362 | 3 | 4 | 0.00000965447 |
| Helianthus annuus | HanXRQChr05 | 5 | CH_han_514 | 3 | 3 | 0.000000492789 |
| Lupinus albus | Lalb_Chr01 | 5 | CH_lal_243 | 3 | 3 | 0.000000681733 |
| Lotus japonicus | chr1 | 5 | CH_lja_172 | 4 | 8 | 0.0000000767715 |
| Lotus japonicus | chr4 | 5 | CH_lja_293 | 3 | 3 | 0.00000279199 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_14 | 18 | 30 | 2.39632e-46 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_662 | 3 | 3 | 0.0000196582 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_472 | 3 | 4 | 0.00000348687 |
| Magnolia biondii | Chr08 | 5 | CH_mbi_1206 | 2 | 2 | 0.000728491 |
| Manihot esculenta | Chromosome11 | 5 | CH_mes_441 | 3 | 5 | 0.0000159883 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_509 | 3 | 7 | 0.0000532497 |
| Petunia axillaris | Peaxi162Scf00081 | 5 | CH_pax_215 | 3 | 3 | 0.00000025988 |
| Populus trichocarpa | Chr05 | 5 | CH_ptr_370 | 3 | 3 | 0.000000826885 |
| Quercus lobata | 5 | 5 | CH_qlo_1060 | 3 | 3 | 0.00000615756 |
| Quercus lobata | 9 | 5 | CH_qlo_120 | 9 | 14 | 7.11958e-23 |
| Quercus lobata | 6 | 5 | CH_qlo_387 | 6 | 13 | 0.00000000000105423 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_292 | 4 | 4 | 0.00000000146735 |
| Rhododendron simsii | chr08 | 5 | CH_rsi_351 | 4 | 6 | 0.0000000219952 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_575 | 3 | 4 | 0.0000139873 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1446 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1549 | 3 | 4 | 0.0000327365 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1550 | 3 | 4 | 0.0000327365 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_562 | 6 | 16 | 0.0000000000087201 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_960 | 4 | 5 | 0.0000000219289 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_174 | 4 | 4 | 0.000000000127398 |
| Selaginella moellendorffii | scaffold_7 | 5 | CH_smo_252 | 3 | 15 | 0.000207797 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_253 | 3 | 3 | 0.000000722019 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_581 | 3 | 18 | 0.000373241 |
| Vitis vinifera | chr18 | 5 | CH_vvi_352 | 3 | 3 | 0.00000104144 |
| Acer truncatum | chr13 | 6 | CH_acertr_182 | 4 | 5 | 0.00000000525951 |
| Acer truncatum | chr2 | 6 | CH_acertr_98 | 5 | 7 | 0.000000000007785 |
| Amborella trichopoda | AmTr_v1.0_scaffold00203 | 6 | CH_atr_36 | 7 | 9 | 8.55318e-20 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_1026 | 3 | 7 | 0.000125688 |
| Camellia sinensis var. sinensis | Chr15 | 6 | CH_camsi_724 | 3 | 3 | 0.00000359562 |
| Capsicum annuum | PGAv.1.6.scaffold1054 | 6 | CH_can_773 | 2 | 2 | 0.000495663 |
| Cicer arietinum L. | Ca_LG5_v3 | 6 | CH_car_235 | 4 | 47 | 0.0000823452 |
| Coffea canephora | chr10 | 6 | CH_ccan_465 | 3 | 53 | 0.0000934215 |
| Carica papaya | supercontig_64 | 6 | CH_cpa_651 | 2 | 2 | 0.000950661 |
| Durio zibethinus | NW_019167826.1 | 6 | CH_dzi_95 | 4 | 4 | 0.0000000000627319 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_362 | 3 | 4 | 0.00000965447 |
| Helianthus annuus | HanXRQChr05 | 6 | CH_han_514 | 3 | 3 | 0.000000492789 |
| Lupinus albus | Lalb_Chr01 | 6 | CH_lal_243 | 3 | 3 | 0.000000681733 |
| Lotus japonicus | chr1 | 6 | CH_lja_172 | 4 | 8 | 0.0000000767715 |
| Lotus japonicus | chr4 | 6 | CH_lja_293 | 3 | 3 | 0.00000279199 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_14 | 18 | 30 | 2.39632e-46 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_662 | 3 | 3 | 0.0000196582 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_472 | 3 | 4 | 0.00000348687 |
| Magnolia biondii | Chr08 | 6 | CH_mbi_1206 | 2 | 2 | 0.000728491 |
| Manihot esculenta | Chromosome11 | 6 | CH_mes_441 | 3 | 5 | 0.0000159883 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_509 | 3 | 7 | 0.0000532497 |
| Petunia axillaris | Peaxi162Scf00081 | 6 | CH_pax_215 | 3 | 3 | 0.00000025988 |
| Populus trichocarpa | Chr05 | 6 | CH_ptr_370 | 3 | 3 | 0.000000826885 |
| Quercus lobata | 5 | 6 | CH_qlo_1060 | 3 | 3 | 0.00000615756 |
| Quercus lobata | 9 | 6 | CH_qlo_120 | 9 | 14 | 7.11958e-23 |
| Quercus lobata | 6 | 6 | CH_qlo_387 | 6 | 13 | 0.00000000000105423 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_292 | 4 | 4 | 0.00000000146735 |
| Rhododendron simsii | chr08 | 6 | CH_rsi_351 | 4 | 6 | 0.0000000219952 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_575 | 3 | 4 | 0.0000139873 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1446 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1549 | 3 | 4 | 0.0000327365 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1550 | 3 | 4 | 0.0000327365 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_562 | 6 | 16 | 0.0000000000087201 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_960 | 4 | 5 | 0.0000000219289 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_174 | 4 | 4 | 0.000000000127398 |
| Selaginella moellendorffii | scaffold_7 | 6 | CH_smo_252 | 3 | 15 | 0.000207797 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_253 | 3 | 3 | 0.000000722019 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_581 | 3 | 18 | 0.000373241 |
| Vitis vinifera | chr18 | 6 | CH_vvi_352 | 3 | 3 | 0.00000104144 |
Available child term results
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |